Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC06111-IBu Data

Chromosome: SC 0126 - Coordinate: SC 0126:90890-103470 - Strand: -


Fig. S5 for SmLINC06111-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_195070.1 0 -1.13 -9.73 -18.26 -16.31
Smp_035200.3 0 -0.02 -1.98 -15.09 -15.09
Smp_184760.1 0 -0.25 -4.83 -11.75 -14.03
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_077690.1 0 -0.88 -2.98 -12.11 -12.11
Smp_168080.2 0 -1.01 -12.06 -12.06 -12.06
Smp_188900.1 0 -1.35 -4.02 -11.76 -11.76
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_160230.1 0 -0.76 -3.24 -8.69 -10.72
SmLINC06111-IBu 0 -0.47 -2.79 -12.47 -8.65
Smp_032970.1 0 -0.24 -2.98 -11.57 -7.79

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032970.1 SmLINC06111-IBu 0.92 7.02e-07 4.16e-05
Smp_035200.3 SmLINC06111-IBu 0.92 1.17e-06 5.98e-05
Smp_036270.4 SmLINC06111-IBu 0.96 8.67e-09 2.07e-06
Smp_077690.1 SmLINC06111-IBu 0.90 2.57e-06 1.00e-04
Smp_111640.1 SmLINC06111-IBu 0.93 4.62e-07 3.11e-05
Smp_160230.1 SmLINC06111-IBu 0.91 1.47e-06 7.02e-05
Smp_168080.2 SmLINC06111-IBu 0.90 2.58e-06 1.00e-04
Smp_184760.1 SmLINC06111-IBu 0.90 4.60e-06 1.00e-04
Smp_188900.1 SmLINC06111-IBu 0.90 2.95e-06 1.00e-04
Smp_195070.1 SmLINC06111-IBu 0.91 1.82e-06 8.15e-05