Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC06076-IBu Data

Chromosome: SC 0125 - Coordinate: SC 0125:678865-680874 - Strand: -


Fig. S5 for SmLINC06076-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC06076-IBu 0 0.00 0.00 1.47 6.53
Smp_194380.1 0 2.98 2.11 7.89 10.14
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_137460.1 0 4.80 0.00 4.12 10.48
Smp_138360.1 0 -0.10 -4.27 4.84 10.60
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_162320.1 0 0.58 2.27 8.70 11.23
Smp_070540.1 0 2.28 0.82 8.01 11.54
Smp_170840.1 0 3.57 0.00 5.93 11.86
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_126340.1 0 0.00 2.97 7.05 12.21
Smp_205580.1 0 2.85 4.80 9.78 12.43
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_164400.1 0 1.88 2.19 6.73 12.73
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_137700.1 0 2.72 4.76 8.79 13.14
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_131410.1 0 3.39 4.65 11.85 14.02
Smp_004420.3 0 0.00 5.84 10.64 14.52
Smp_007950.1 0 5.54 7.26 12.66 14.89
Smp_105450.1 0 4.55 9.19 10.26 14.94
Smp_152150.1 0 0.00 0.00 8.69 15.96

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_004420.3 SmLINC06076-IBu 0.90 3.30e-06 1.00e-04
Smp_007950.1 SmLINC06076-IBu 0.91 2.21e-06 9.34e-05
Smp_037720.1 SmLINC06076-IBu 0.93 4.47e-07 3.03e-05
Smp_041540.1 SmLINC06076-IBu 0.99 4.35e-14 9.78e-10
Smp_070540.1 SmLINC06076-IBu 0.99 7.46e-14 1.36e-09
Smp_105450.1 SmLINC06076-IBu 0.98 4.24e-12 1.62e-08
Smp_105450.2 SmLINC06076-IBu 0.97 5.34e-10 3.40e-07
Smp_126340.1 SmLINC06076-IBu 0.99 1.03e-13 1.65e-09
Smp_130100.1 SmLINC06076-IBu 0.90 2.63e-06 1.00e-04
Smp_131410.1 SmLINC06076-IBu 0.90 3.48e-06 1.00e-04
Smp_136730.1 SmLINC06076-IBu 0.96 3.15e-09 1.07e-06
Smp_137460.1 SmLINC06076-IBu 0.95 5.85e-08 7.51e-06
Smp_137700.1 SmLINC06076-IBu 0.92 5.65e-07 3.57e-05
Smp_138360.1 SmLINC06076-IBu 0.92 5.29e-07 3.41e-05
Smp_139160.1 SmLINC06076-IBu 0.95 5.99e-08 7.63e-06
Smp_139240.1 SmLINC06076-IBu 0.93 3.15e-07 2.38e-05
Smp_152150.1 SmLINC06076-IBu 0.95 3.18e-08 4.97e-06
Smp_162320.1 SmLINC06076-IBu 0.91 2.00e-06 8.72e-05
Smp_164400.1 SmLINC06076-IBu 0.97 7.47e-10 4.23e-07
Smp_170840.1 SmLINC06076-IBu 0.91 2.00e-06 8.70e-05
Smp_181070.1 SmLINC06076-IBu 0.95 3.43e-08 5.23e-06
Smp_187140.1 SmLINC06076-IBu 0.93 4.10e-07 2.86e-05
Smp_194380.1 SmLINC06076-IBu 0.91 2.05e-06 8.86e-05
Smp_194910.1 SmLINC06076-IBu 0.94 1.33e-07 1.31e-05
Smp_205580.1 SmLINC06076-IBu 0.92 8.93e-07 4.92e-05