Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC06048-IBu Data

Chromosome: SC 0125 - Coordinate: SC 0125:185460-188451 - Strand: -


Fig. S5 for SmLINC06048-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_200120.1 0 0.50 0.80 -8.32 -11.63
Smp_059530.1 0 2.86 3.32 -11.10 -11.10
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_168800.1 0 0.13 -0.51 -10.46 -10.46
Smp_062610.2 0 -1.05 -0.32 -6.81 -10.38
Smp_036270.3 0 1.18 2.21 -10.17 -10.17
SmLINC06048-IBu 0 0.79 1.93 -4.19 -7.12
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48
Smp_034840.1 0 12.23 13.88 0.00 0.00
Smp_017650.1 0 9.51 10.68 -7.98 0.00
Smp_063650.3 0 8.82 10.72 0.00 0.00
Smp_083380.2 0 9.13 10.31 0.00 0.00
Smp_062070.1 0 9.47 10.97 6.18 8.79
Smp_021340.3 0 9.76 11.05 9.34 9.26
Smp_098370.1 0 9.63 11.25 6.43 9.48
Smp_103540.1 0 11.43 12.63 8.84 9.65
Smp_084940.2 0 10.34 11.98 9.66 9.92
Smp_159150.1 0 12.28 13.98 12.38 11.81
Smp_099160.4 0 11.96 13.30 11.03 12.32

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_017650.1 SmLINC06048-IBu 0.95 1.62e-08 3.15e-06
Smp_021340.3 SmLINC06048-IBu 0.93 2.66e-07 2.12e-05
Smp_032120.1 SmLINC06048-IBu 0.97 6.58e-10 3.89e-07
Smp_034840.1 SmLINC06048-IBu 0.94 1.08e-07 1.14e-05
Smp_036270.3 SmLINC06048-IBu 0.98 1.10e-10 1.24e-07
Smp_059340.3 SmLINC06048-IBu 0.97 2.10e-09 8.23e-07
Smp_059530.1 SmLINC06048-IBu 0.91 1.64e-06 7.59e-05
Smp_062070.1 SmLINC06048-IBu 0.95 1.48e-08 2.97e-06
Smp_062610.2 SmLINC06048-IBu 0.95 1.92e-08 3.54e-06
Smp_063650.3 SmLINC06048-IBu 0.93 2.64e-07 2.11e-05
Smp_083380.2 SmLINC06048-IBu 0.93 4.13e-07 2.88e-05
Smp_084940.2 SmLINC06048-IBu 0.95 5.27e-08 7.00e-06
Smp_098370.1 SmLINC06048-IBu 0.95 3.28e-08 5.08e-06
Smp_099160.4 SmLINC06048-IBu 0.93 5.10e-07 3.33e-05
Smp_103540.1 SmLINC06048-IBu 0.96 2.63e-09 9.51e-07
Smp_159070.3 SmLINC06048-IBu 0.94 6.47e-08 8.05e-06
Smp_159150.1 SmLINC06048-IBu 0.91 2.33e-06 9.69e-05
Smp_168800.1 SmLINC06048-IBu 0.93 2.18e-07 1.85e-05
Smp_200120.1 SmLINC06048-IBu 0.96 1.23e-08 2.62e-06