Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC06021-IBu Data

Chromosome: SC 0113 - Coordinate: SC 0113:770698-774264 - Strand: -


Fig. 6A for SmLINC06021-IBu with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_105420.2 0 0.72 -0.11 -12.04 -12.04
SmLINC06021-IBu 0 0.49 1.13 -8.68 -8.68
Smp_046500.1 0 0.38 0.61 -8.46 -8.46
Smp_059210.2 0 -0.42 -0.55 -4.87 -6.09
Smp_005260.2 0 -0.36 -1.30 -5.79 -5.89
Smp_132160.1 0 -0.52 -0.30 -3.96 -5.23
Smp_090930.5 0 0.88 1.41 -11.45 -5.15
Smp_028860.1 0 -0.07 -0.66 -4.17 -4.88
Smp_023140.1 0 -0.84 -0.87 -5.26 -4.87
Smp_179300.2 0 -1.95 -0.51 -3.94 -4.73
Smp_031770.7 0 0.70 0.33 -3.21 -4.54
Smp_099810.1 0 -0.11 -0.66 -4.18 -4.40
Smp_058170.1 0 -0.02 0.05 -6.42 -4.35
Smp_192030.1 0 1.02 1.31 -3.21 -4.10
Smp_035640.1 0 0.66 2.47 -3.45 -3.92
Smp_158680.1 0 0.18 0.75 -3.19 -3.53
Smp_131300.1 0 1.18 2.14 -4.87 -2.56
Smp_146710.1 0 2.31 2.58 -1.48 -1.30
Smp_035290.1 0 -2.51 -6.13 -0.77 0.19

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_005260.2 SmLINC06021-IBu 0.86 3.72e-05 6.00e-04
Smp_023140.1 SmLINC06021-IBu 0.81 1.00e-04 2.30e-03
Smp_028860.1 SmLINC06021-IBu 0.86 3.44e-05 6.00e-04
Smp_031770.7 SmLINC06021-IBu 0.87 2.24e-05 4.00e-04
Smp_035290.1 SmLINC06021-IBu -0.83 1.00e-04 1.40e-03
Smp_035640.1 SmLINC06021-IBu 0.80 2.00e-04 2.70e-03
Smp_046500.1 SmLINC06021-IBu 0.81 2.00e-04 2.30e-03
Smp_058170.1 SmLINC06021-IBu 0.84 6.81e-05 1.00e-03
Smp_059210.2 SmLINC06021-IBu 0.81 1.00e-04 2.20e-03
Smp_090930.5 SmLINC06021-IBu 0.82 1.00e-04 2.10e-03
Smp_099810.1 SmLINC06021-IBu 0.82 1.00e-04 1.90e-03
Smp_105420.2 SmLINC06021-IBu 0.81 2.00e-04 2.30e-03
Smp_131300.1 SmLINC06021-IBu 0.82 1.00e-04 1.70e-03
Smp_132160.1 SmLINC06021-IBu 0.85 4.71e-05 8.00e-04
Smp_146710.1 SmLINC06021-IBu 0.82 1.00e-04 1.90e-03
Smp_158680.1 SmLINC06021-IBu 0.81 2.00e-04 2.60e-03
Smp_179300.2 SmLINC06021-IBu 0.83 1.00e-04 1.50e-03
Smp_192030.1 SmLINC06021-IBu 0.84 7.33e-05 1.10e-03