Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC06000-IBu Data

Chromosome: SC 0111 - Coordinate: SC 0111:795093-809503 - Strand: +


Fig. S5 for SmLINC06000-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC06000-IBu 0 1.88 0.00 3.45 9.47
Smp_089270.1 0 3.49 0.00 4.50 10.21
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_137460.1 0 4.80 0.00 4.12 10.48
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_070540.1 0 2.28 0.82 8.01 11.54
Smp_170840.1 0 3.57 0.00 5.93 11.86
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_126340.1 0 0.00 2.97 7.05 12.21
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_164400.1 0 1.88 2.19 6.73 12.73
Smp_167830.1 0 0.00 0.00 6.17 12.87
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_105450.1 0 4.55 9.19 10.26 14.94
Smp_152150.1 0 0.00 0.00 8.69 15.96

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_037720.1 SmLINC06000-IBu 0.92 9.17e-07 5.02e-05
Smp_041540.1 SmLINC06000-IBu 0.98 4.81e-12 1.76e-08
Smp_070540.1 SmLINC06000-IBu 0.98 6.71e-12 2.15e-08
Smp_089270.1 SmLINC06000-IBu 0.90 2.53e-06 1.00e-04
Smp_105450.1 SmLINC06000-IBu 0.97 9.40e-10 4.90e-07
Smp_105450.2 SmLINC06000-IBu 0.95 2.95e-08 4.72e-06
Smp_126340.1 SmLINC06000-IBu 0.98 2.04e-11 4.29e-08
Smp_136730.1 SmLINC06000-IBu 0.94 6.48e-08 8.05e-06
Smp_137460.1 SmLINC06000-IBu 0.92 5.88e-07 3.68e-05
Smp_139160.1 SmLINC06000-IBu 0.92 9.32e-07 5.07e-05
Smp_139240.1 SmLINC06000-IBu 0.91 2.32e-06 9.67e-05
Smp_152150.1 SmLINC06000-IBu 0.94 1.27e-07 1.28e-05
Smp_164400.1 SmLINC06000-IBu 0.96 1.07e-08 2.38e-06
Smp_167830.1 SmLINC06000-IBu 0.91 2.10e-06 9.00e-05
Smp_170840.1 SmLINC06000-IBu 0.92 9.30e-07 5.07e-05
Smp_181070.1 SmLINC06000-IBu 0.92 5.43e-07 3.48e-05
Smp_187140.1 SmLINC06000-IBu 0.90 3.13e-06 1.00e-04
Smp_194910.1 SmLINC06000-IBu 0.91 1.49e-06 7.08e-05