Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC05990-IBu Data

Chromosome: SC 0111 - Coordinate: SC 0111:607252-608025 - Strand: -


Fig. 6A for SmLINC05990-IBu with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_195070.1 0 -1.13 -9.73 -18.26 -16.31
Smp_034940.3 0 -1.53 -6.25 -9.66 -13.38
Smp_051230.4 0 -1.10 -5.26 -12.47 -12.47
Smp_168080.2 0 -1.01 -12.06 -12.06 -12.06
Smp_188900.1 0 -1.35 -4.02 -11.76 -11.76
Smp_110400.3 0 -1.47 -2.30 -8.95 -9.88
Smp_175890.1 0 -0.96 -2.50 -8.62 -9.58
Smp_125090.1 0 -1.49 -2.90 -8.82 -8.63
Smp_191250.1 0 -0.43 -3.38 -7.55 -8.30
Smp_145710.1 0 -1.79 -2.79 -7.90 -7.78
Smp_124150.1 0 -1.14 -4.97 -8.99 -7.14
Smp_021060.1 0 -1.00 -2.60 -4.96 -6.87
Smp_018510.1 0 -0.95 -2.76 -7.05 -6.82
Smp_182910.1 0 -1.24 -2.03 -6.37 -6.64
Smp_199470.1 0 -0.59 -3.42 -6.26 -6.59
Smp_162370.1 0 -1.45 -4.56 -9.04 -5.93
Smp_051230.3 0 -1.49 -4.66 -6.27 -4.15
Smp_157450.1 0 -1.07 -2.97 -4.27 -4.05
Smp_178400.1 0 -0.69 -3.92 -8.55 -3.91
Smp_139790.1 0 -0.75 -6.56 -6.76 -3.63
Smp_185080.1 0 -0.58 -3.13 -5.88 -3.60
Smp_077310.1 0 0.24 -0.20 3.38 3.16
Smp_045220.2 0 0.93 0.81 4.20 3.26
Smp_055140.1 0 0.48 -0.65 3.41 3.43
Smp_200440.1 0 1.00 0.69 3.32 4.08
Smp_001950.1 0 1.95 2.67 4.96 4.27
Smp_140650.1 0 1.23 1.76 4.59 4.32
Smp_047240.2 0 3.37 3.80 6.07 4.36
Smp_204720.1 0 1.63 2.16 4.61 4.41
Smp_055640.1 0 1.44 3.41 4.52 4.57
Smp_070380.1 0 2.49 3.20 5.35 4.60
Smp_168980.1 0 2.54 4.65 5.85 4.62
Smp_026910.2 0 2.49 2.18 4.84 4.65
Smp_214020.1 0 1.35 2.40 4.26 4.68
Smp_144110.1 0 2.19 3.58 5.09 4.77
Smp_205920.1 0 2.95 2.42 4.90 4.77
Smp_117170.1 0 1.39 2.23 4.80 4.82
Smp_164670.1 0 2.08 3.82 5.29 4.83
Smp_203390.1 0 1.08 3.39 4.79 4.84
Smp_155210.1 0 0.30 2.34 4.66 4.88
Smp_058670.1 0 2.95 3.28 5.54 4.95
Smp_142080.1 0 1.40 2.62 4.98 4.98
Smp_000900.1 0 3.50 3.43 6.11 5.02
Smp_079480.1 0 2.09 4.38 6.25 5.24
Smp_133650.1 0 1.88 2.30 5.21 5.35
Smp_077720.1 0 2.95 5.46 6.14 5.37
Smp_139540.2 0 4.25 2.46 5.22 5.47
Smp_021260.1 0 2.83 3.49 6.01 5.48
Smp_175770.1 0 3.08 4.56 5.55 5.56
Smp_034030.1 0 3.37 4.72 5.69 5.61
Smp_157390.1 0 3.34 4.15 5.22 5.62
Smp_139280.1 0 4.38 5.26 6.40 5.71
Smp_173110.1 0 4.09 5.06 6.58 5.81
Smp_137980.1 0 4.49 5.09 6.98 5.86
Smp_161650.1 0 4.64 4.26 7.15 5.86
Smp_175730.1 0 4.46 5.10 6.62 5.99
Smp_134380.1 0 2.77 4.12 7.09 6.35
Smp_170640.1 0 4.04 6.04 7.65 7.37
Smp_141480.1 0 7.59 4.10 10.61 8.33
Smp_030830.1 0 6.70 6.36 8.23 8.69
Smp_160000.2 0 6.42 8.33 8.49 8.70
Smp_176430.2 0 9.09 10.43 10.57 10.62
Smp_040720.3 0 8.84 10.93 11.66 10.78
Smp_130790.1 0 8.99 8.69 10.99 11.23
SmLINC05990-IBu 0 9.67 10.42 11.79 11.49
Smp_071380.3 0 11.07 11.55 12.98 12.17
Smp_125770.1 0 12.11 11.27 12.57 12.83

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000900.1 SmLINC05990-IBu 0.83 1.00e-04 1.60e-03
Smp_001950.1 SmLINC05990-IBu 0.85 5.40e-05 9.00e-04
Smp_018510.1 SmLINC05990-IBu -0.82 1.00e-04 1.80e-03
Smp_021060.1 SmLINC05990-IBu -0.83 1.00e-04 1.60e-03
Smp_021260.1 SmLINC05990-IBu 0.80 3.00e-04 3.20e-03
Smp_026910.2 SmLINC05990-IBu 0.86 3.33e-05 6.00e-04
Smp_030830.1 SmLINC05990-IBu 0.81 2.00e-04 2.60e-03
Smp_034030.1 SmLINC05990-IBu 0.82 1.00e-04 1.70e-03
Smp_034940.3 SmLINC05990-IBu -0.80 3.00e-04 3.30e-03
Smp_040720.3 SmLINC05990-IBu 0.84 7.69e-05 1.10e-03
Smp_045220.2 SmLINC05990-IBu 0.88 1.16e-05 2.00e-04
Smp_047240.2 SmLINC05990-IBu 0.83 1.00e-04 1.40e-03
Smp_051230.3 SmLINC05990-IBu -0.84 8.21e-05 1.20e-03
Smp_051230.4 SmLINC05990-IBu -0.80 3.00e-04 3.30e-03
Smp_055140.1 SmLINC05990-IBu 0.82 1.00e-04 2.10e-03
Smp_055640.1 SmLINC05990-IBu 0.80 2.00e-04 3.00e-03
Smp_058670.1 SmLINC05990-IBu 0.81 2.00e-04 2.40e-03
Smp_070380.1 SmLINC05990-IBu 0.88 9.79e-06 2.00e-04
Smp_071380.3 SmLINC05990-IBu 0.95 3.18e-08 4.68e-06
Smp_077310.1 SmLINC05990-IBu 0.80 3.00e-04 3.20e-03
Smp_077720.1 SmLINC05990-IBu 0.80 3.00e-04 3.40e-03
Smp_079480.1 SmLINC05990-IBu 0.82 1.00e-04 2.10e-03
Smp_110400.3 SmLINC05990-IBu -0.81 2.00e-04 2.60e-03
Smp_117170.1 SmLINC05990-IBu 0.81 2.00e-04 2.50e-03
Smp_124150.1 SmLINC05990-IBu -0.84 7.66e-05 1.10e-03
Smp_125090.1 SmLINC05990-IBu -0.81 2.00e-04 2.70e-03
Smp_125770.1 SmLINC05990-IBu 0.80 2.00e-04 3.00e-03
Smp_130790.1 SmLINC05990-IBu 0.85 5.98e-05 9.00e-04
Smp_133650.1 SmLINC05990-IBu 0.84 7.33e-05 1.10e-03
Smp_134380.1 SmLINC05990-IBu 0.81 2.00e-04 2.60e-03
Smp_137980.1 SmLINC05990-IBu 0.89 5.18e-06 1.00e-04
Smp_139280.1 SmLINC05990-IBu 0.89 7.41e-06 2.00e-04
Smp_139540.2 SmLINC05990-IBu 0.83 1.00e-04 1.40e-03
Smp_139790.1 SmLINC05990-IBu -0.82 1.00e-04 2.10e-03
Smp_140650.1 SmLINC05990-IBu 0.83 1.00e-04 1.60e-03
Smp_141480.1 SmLINC05990-IBu 0.80 2.00e-04 3.10e-03
Smp_142080.1 SmLINC05990-IBu 0.89 5.71e-06 1.00e-04
Smp_144110.1 SmLINC05990-IBu 0.81 1.00e-04 2.20e-03
Smp_145710.1 SmLINC05990-IBu -0.81 2.00e-04 2.50e-03
Smp_155210.1 SmLINC05990-IBu 0.80 2.00e-04 3.10e-03
Smp_157390.1 SmLINC05990-IBu 0.91 2.27e-06 9.20e-05
Smp_157450.1 SmLINC05990-IBu -0.83 9.00e-05 1.30e-03
Smp_160000.2 SmLINC05990-IBu 0.84 8.19e-05 1.20e-03
Smp_161650.1 SmLINC05990-IBu 0.84 8.04e-05 1.20e-03
Smp_162370.1 SmLINC05990-IBu -0.84 7.86e-05 1.10e-03
Smp_164670.1 SmLINC05990-IBu 0.86 3.79e-05 6.00e-04
Smp_168080.2 SmLINC05990-IBu -0.82 1.00e-04 1.70e-03
Smp_168980.1 SmLINC05990-IBu 0.82 1.00e-04 1.80e-03
Smp_170640.1 SmLINC05990-IBu 0.82 1.00e-04 1.90e-03
Smp_173110.1 SmLINC05990-IBu 0.81 2.00e-04 2.70e-03
Smp_175730.1 SmLINC05990-IBu 0.88 1.00e-05 2.00e-04
Smp_175770.1 SmLINC05990-IBu 0.81 2.00e-04 2.30e-03
Smp_175890.1 SmLINC05990-IBu -0.81 2.00e-04 2.50e-03
Smp_176430.2 SmLINC05990-IBu 0.87 1.95e-05 4.00e-04
Smp_178400.1 SmLINC05990-IBu -0.80 3.00e-04 3.30e-03
Smp_182910.1 SmLINC05990-IBu -0.80 2.00e-04 3.00e-03
Smp_185080.1 SmLINC05990-IBu -0.82 1.00e-04 2.00e-03
Smp_188900.1 SmLINC05990-IBu -0.80 3.00e-04 3.20e-03
Smp_191250.1 SmLINC05990-IBu -0.80 2.00e-04 3.00e-03
Smp_195070.1 SmLINC05990-IBu -0.80 2.00e-04 3.00e-03
Smp_199470.1 SmLINC05990-IBu -0.81 2.00e-04 2.40e-03
Smp_200440.1 SmLINC05990-IBu 0.83 1.00e-04 1.50e-03
Smp_203390.1 SmLINC05990-IBu 0.82 1.00e-04 1.90e-03
Smp_204720.1 SmLINC05990-IBu 0.89 8.13e-06 2.00e-04
Smp_205920.1 SmLINC05990-IBu 0.93 2.02e-07 1.67e-05
Smp_214020.1 SmLINC05990-IBu 0.85 3.92e-05 7.00e-04
Fig. S5 for SmLINC05990-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC05990-IBu 0 9.67 10.42 11.79 11.49
Smp_071380.3 0 11.07 11.55 12.98 12.17

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_071380.3 SmLINC05990-IBu 0.95 3.18e-08 4.97e-06