Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC05971-IBu Data

Chromosome: SC 0097 - Coordinate: SC 0097:615637-633972 - Strand: +


Fig. S5 for SmLINC05971-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_051230.4 0 -1.10 -5.26 -12.47 -12.47
Smp_112090.1 0 0.15 -7.44 -10.10 -10.10
Smp_165300.1 0 -0.91 -2.66 -11.47 -6.39
SmLINC05971-IBu 0 -0.67 -3.32 -4.64 -5.79
Smp_001830.2 0 -0.90 -12.67 -2.68 -4.83

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_001830.2 SmLINC05971-IBu 0.90 2.79e-06 1.00e-04
Smp_036270.4 SmLINC05971-IBu 0.92 8.99e-07 4.95e-05
Smp_051230.4 SmLINC05971-IBu 0.90 3.49e-06 1.00e-04
Smp_112090.1 SmLINC05971-IBu 0.92 6.23e-07 3.83e-05
Smp_165300.1 SmLINC05971-IBu 0.92 5.30e-07 3.42e-05