Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC05969-IBu Data

Chromosome: SC 0097 - Coordinate: SC 0097:615637-627592 - Strand: +


Fig. S5 for SmLINC05969-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC05969-IBu 0 -0.28 -0.93 -11.78 -11.78
Smp_206250.1 0 -0.30 -1.54 -11.39 -11.39
Smp_048260.1 0 -0.22 -2.11 -11.13 -11.13
Smp_086600.1 0 -0.12 -0.81 -6.58 -10.32
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_156930.1 0 0.00 0.00 11.62 12.40
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_172960.1 0 3.27 6.54 14.72 15.13

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_033260.1 SmLINC05969-IBu -0.92 7.00e-07 4.15e-05
Smp_040970.2 SmLINC05969-IBu -0.90 2.73e-06 1.00e-04
Smp_048260.1 SmLINC05969-IBu 0.93 4.08e-07 2.85e-05
Smp_050350.3 SmLINC05969-IBu -0.92 1.11e-06 5.76e-05
Smp_052280.2 SmLINC05969-IBu -0.94 1.45e-07 1.40e-05
Smp_056460.1 SmLINC05969-IBu -0.91 1.31e-06 6.47e-05
Smp_079420.1 SmLINC05969-IBu -0.91 1.38e-06 6.71e-05
Smp_086600.1 SmLINC05969-IBu 0.90 3.03e-06 1.00e-04
Smp_094050.1 SmLINC05969-IBu -0.91 1.68e-06 7.70e-05
Smp_137000.2 SmLINC05969-IBu -0.90 4.81e-06 1.00e-04
Smp_156930.1 SmLINC05969-IBu -0.90 4.50e-06 1.00e-04
Smp_172960.1 SmLINC05969-IBu -0.90 4.37e-06 1.00e-04
Smp_194860.1 SmLINC05969-IBu -0.91 1.28e-06 6.37e-05
Smp_206250.1 SmLINC05969-IBu 0.93 2.23e-07 1.88e-05