Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC05962-IBu Data

Chromosome: SC 0097 - Coordinate: SC 0097:494105-500998 - Strand: -


Fig. S5 for SmLINC05962-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_159070.2 0 -0.62 -11.03 1.85 1.97
Smp_197400.1 0 0.00 0.00 10.12 7.45
Smp_131840.1 0 1.87 2.16 10.14 8.34
Smp_084270.1 0 3.51 4.06 10.11 8.38
SmLINC05962-IBu 0 0.25 0.00 9.29 8.56
Smp_154190.1 0 -1.93 -1.93 10.13 8.88
Smp_134960.1 0 -1.83 4.14 10.34 9.04
Smp_118560.1 0 6.31 8.12 10.54 9.19
Smp_005470.1 0 4.39 7.68 10.83 9.26
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_172520.1 0 3.57 6.60 11.28 9.54
Smp_105730.1 0 0.00 0.00 11.80 9.62
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_205270.1 0 0.71 -0.40 10.02 9.83
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_164550.1 0 5.78 6.30 11.08 9.99
Smp_166860.1 0 0.00 0.00 10.18 10.19
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_194980.1 0 2.89 8.17 12.59 10.55
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_203090.1 0 0.00 0.00 10.35 10.67
Smp_081920.1 0 -1.83 3.45 12.11 11.06
Smp_058140.3 0 6.20 8.66 11.88 11.12
Smp_068270.1 0 0.21 0.34 12.30 11.22
Smp_123200.1 0 0.00 0.00 12.38 11.42
Smp_123550.1 0 2.43 2.16 11.52 11.47
Smp_031040.1 0 8.57 0.03 12.35 12.40
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_014780.1 0 9.27 11.17 13.92 13.01
Smp_154180.1 0 5.56 0.00 15.37 13.48
Smp_051210.3 0 3.15 11.52 13.74 13.72
Smp_194970.1 0 6.28 10.15 15.43 13.82
Smp_172960.1 0 3.27 6.54 14.72 15.13
Smp_194960.1 0 0.00 0.00 17.20 15.87

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_005470.1 SmLINC05962-IBu 0.94 6.65e-08 8.19e-06
Smp_014780.1 SmLINC05962-IBu 0.93 3.27e-07 2.45e-05
Smp_031040.1 SmLINC05962-IBu 0.93 3.70e-07 2.66e-05
Smp_045200.1 SmLINC05962-IBu 0.93 3.67e-07 2.65e-05
Smp_051210.3 SmLINC05962-IBu 0.90 2.71e-06 1.00e-04
Smp_058140.3 SmLINC05962-IBu 0.96 2.49e-09 9.19e-07
Smp_058660.1 SmLINC05962-IBu 0.91 2.46e-06 1.00e-04
Smp_068270.1 SmLINC05962-IBu 0.92 1.10e-06 5.73e-05
Smp_081920.1 SmLINC05962-IBu 0.95 2.87e-08 4.63e-06
Smp_082580.1 SmLINC05962-IBu 0.94 1.04e-07 1.11e-05
Smp_084270.1 SmLINC05962-IBu 0.90 4.46e-06 1.00e-04
Smp_105730.1 SmLINC05962-IBu 0.92 6.57e-07 3.97e-05
Smp_118560.1 SmLINC05962-IBu 0.90 4.23e-06 1.00e-04
Smp_123200.1 SmLINC05962-IBu 0.94 1.62e-07 1.50e-05
Smp_123550.1 SmLINC05962-IBu 0.93 4.28e-07 2.95e-05
Smp_125210.1 SmLINC05962-IBu 0.90 4.57e-06 1.00e-04
Smp_131840.1 SmLINC05962-IBu 0.94 9.07e-08 1.01e-05
Smp_134960.1 SmLINC05962-IBu 0.92 1.07e-06 5.60e-05
Smp_137320.1 SmLINC05962-IBu 0.90 3.26e-06 1.00e-04
Smp_141680.1 SmLINC05962-IBu 0.94 1.60e-07 1.49e-05
Smp_150980.2 SmLINC05962-IBu 0.94 8.25e-08 9.49e-06
Smp_151120.1 SmLINC05962-IBu 0.94 1.79e-07 1.61e-05
Smp_154180.1 SmLINC05962-IBu 0.94 1.33e-07 1.31e-05
Smp_154190.1 SmLINC05962-IBu 0.93 4.51e-07 3.05e-05
Smp_159070.2 SmLINC05962-IBu 0.90 3.11e-06 1.00e-04
Smp_164550.1 SmLINC05962-IBu 0.90 2.64e-06 1.00e-04
Smp_166860.1 SmLINC05962-IBu 0.94 8.09e-08 9.36e-06
Smp_170280.1 SmLINC05962-IBu 0.91 1.85e-06 8.25e-05
Smp_172480.1 SmLINC05962-IBu 0.95 5.60e-08 7.29e-06
Smp_172520.1 SmLINC05962-IBu 0.94 8.62e-08 9.78e-06
Smp_172960.1 SmLINC05962-IBu 0.91 1.87e-06 8.30e-05
Smp_194960.1 SmLINC05962-IBu 0.94 6.74e-08 8.27e-06
Smp_194970.1 SmLINC05962-IBu 0.93 3.91e-07 2.77e-05
Smp_194980.1 SmLINC05962-IBu 0.91 1.36e-06 6.64e-05
Smp_197400.1 SmLINC05962-IBu 0.91 1.92e-06 8.47e-05
Smp_203090.1 SmLINC05962-IBu 0.94 1.15e-07 1.19e-05
Smp_205270.1 SmLINC05962-IBu 0.95 5.61e-08 7.30e-06