Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC05961-IBu Data

Chromosome: SC 0097 - Coordinate: SC 0097:494105-500998 - Strand: -


Fig. S5 for SmLINC05961-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_205270.1 0 0.71 -0.40 10.02 9.83
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_166860.1 0 0.00 0.00 10.18 10.19
Smp_203090.1 0 0.00 0.00 10.35 10.67
SmLINC05961-IBu 0 0.89 0.00 11.11 10.79
Smp_058140.3 0 6.20 8.66 11.88 11.12
Smp_123550.1 0 2.43 2.16 11.52 11.47
Smp_177580.1 0 3.28 2.12 11.83 11.79
Smp_031040.1 0 8.57 0.03 12.35 12.40
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_172960.1 0 3.27 6.54 14.72 15.13

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_031040.1 SmLINC05961-IBu 0.92 7.22e-07 4.24e-05
Smp_058140.3 SmLINC05961-IBu 0.93 2.68e-07 2.13e-05
Smp_123550.1 SmLINC05961-IBu 0.91 1.20e-06 6.09e-05
Smp_150980.2 SmLINC05961-IBu 0.91 1.51e-06 7.16e-05
Smp_151120.1 SmLINC05961-IBu 0.91 1.50e-06 7.12e-05
Smp_166860.1 SmLINC05961-IBu 0.94 8.79e-08 9.91e-06
Smp_172480.1 SmLINC05961-IBu 0.92 1.06e-06 5.57e-05
Smp_172960.1 SmLINC05961-IBu 0.91 2.13e-06 9.11e-05
Smp_177580.1 SmLINC05961-IBu 0.90 2.68e-06 1.00e-04
Smp_203090.1 SmLINC05961-IBu 0.95 5.83e-08 7.50e-06
Smp_205270.1 SmLINC05961-IBu 0.91 1.99e-06 8.68e-05