Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC05956-IBu Data

Chromosome: SC 0097 - Coordinate: SC 0097:485236-490557 - Strand: +


Fig. S5 for SmLINC05956-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_035200.3 0 -0.02 -1.98 -15.09 -15.09
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_185170.1 0 0.77 -2.29 -11.66 -11.66
Smp_185830.1 0 1.64 -1.15 -9.24 -11.35
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_205450.1 0 0.54 -1.87 -11.14 -11.14
Smp_125070.1 0 0.25 -4.98 -10.91 -10.91
Smp_112090.1 0 0.15 -7.44 -10.10 -10.10
Smp_204360.1 0 0.81 -0.39 -6.29 -10.08
Smp_184710.1 0 0.54 -2.76 -11.35 -9.04
Smp_032970.1 0 -0.24 -2.98 -11.57 -7.79
Smp_182090.1 0 0.34 -10.52 -4.07 -5.68
SmLINC05956-IBu 0 0.14 -1.45 -3.73 -4.48

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032970.1 SmLINC05956-IBu 0.93 2.15e-07 1.83e-05
Smp_035200.3 SmLINC05956-IBu 0.92 7.93e-07 4.53e-05
Smp_036270.4 SmLINC05956-IBu 0.96 3.29e-09 1.10e-06
Smp_111640.1 SmLINC05956-IBu 0.96 9.86e-09 2.26e-06
Smp_112090.1 SmLINC05956-IBu 0.93 1.98e-07 1.73e-05
Smp_125070.1 SmLINC05956-IBu 0.92 9.82e-07 5.26e-05
Smp_182090.1 SmLINC05956-IBu 0.91 1.29e-06 6.38e-05
Smp_184710.1 SmLINC05956-IBu 0.96 7.07e-09 1.81e-06
Smp_185170.1 SmLINC05956-IBu 0.91 1.51e-06 7.14e-05
Smp_185830.1 SmLINC05956-IBu 0.93 3.41e-07 2.52e-05
Smp_204360.1 SmLINC05956-IBu 0.96 5.21e-09 1.48e-06
Smp_205450.1 SmLINC05956-IBu 0.96 7.45e-09 1.88e-06