Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC05908-IBu Data

Chromosome: SC 0062 - Coordinate: SC 0062:1366004-1367335 - Strand: -


Fig. S5 for SmLINC05908-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_185830.1 0 1.64 -1.15 -9.24 -11.35
Smp_032320.1 0 1.14 -10.97 -10.97 -10.97
Smp_185680.1 0 1.75 -5.39 -10.59 -10.59
Smp_204360.1 0 0.81 -0.39 -6.29 -10.08
Smp_184710.1 0 0.54 -2.76 -11.35 -9.04
SmLINC05908-IBu 0 4.74 -1.08 -2.12 -1.94

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032320.1 SmLINC05908-IBu 0.91 1.90e-06 8.39e-05
Smp_184710.1 SmLINC05908-IBu 0.90 4.86e-06 1.00e-04
Smp_185680.1 SmLINC05908-IBu 0.95 5.57e-08 7.27e-06
Smp_185830.1 SmLINC05908-IBu 0.94 1.65e-07 1.52e-05
Smp_204360.1 SmLINC05908-IBu 0.90 4.00e-06 1.00e-04