Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC05906-IBu Data

Chromosome: SC 0062 - Coordinate: SC 0062:1063492-1067471 - Strand: -


Fig. S5 for SmLINC05906-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_176230.2 0 0.48 -0.91 -5.65 -11.30
Smp_212510.1 0 -0.05 -0.36 -7.08 -10.79
Smp_168800.1 0 0.13 -0.51 -10.46 -10.46
SmLINC05906-IBu 0 0.43 -0.01 -5.65 -6.57
Smp_038870.2 0 -10.39 -10.39 1.75 2.41

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_038870.2 SmLINC05906-IBu -0.90 2.98e-06 1.00e-04
Smp_168800.1 SmLINC05906-IBu 0.93 2.97e-07 2.29e-05
Smp_176230.2 SmLINC05906-IBu 0.90 3.85e-06 1.00e-04
Smp_212510.1 SmLINC05906-IBu 0.90 3.04e-06 1.00e-04