Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC05880-IBu Data

Chromosome: SC 0049 - Coordinate: SC 0049:1102395-1108570 - Strand: -


Fig. S5 for SmLINC05880-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_185830.1 0 1.64 -1.15 -9.24 -11.35
Smp_185680.1 0 1.75 -5.39 -10.59 -10.59
SmLINC05880-IBu 0 6.03 2.62 1.21 1.44

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_185680.1 SmLINC05880-IBu 0.91 2.16e-06 9.19e-05
Smp_185830.1 SmLINC05880-IBu 0.91 2.31e-06 9.65e-05