Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC05865-IBu Data

Chromosome: SC 0049 - Coordinate: SC 0049:68625-71994 - Strand: -


Fig. S5 for SmLINC05865-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_185830.1 0 1.64 -1.15 -9.24 -11.35
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_184710.1 0 0.54 -2.76 -11.35 -9.04
SmLINC05865-IBu 0 0.94 -1.20 -2.51 -4.56

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_111640.1 SmLINC05865-IBu 0.90 3.46e-06 1.00e-04
Smp_184710.1 SmLINC05865-IBu 0.93 3.97e-07 2.80e-05
Smp_185830.1 SmLINC05865-IBu 0.90 4.23e-06 1.00e-04