Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC05850-IBu Data

Chromosome: SC 0041 - Coordinate: SC 0041:338650-353532 - Strand: -


Fig. S5 for SmLINC05850-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_160230.1 0 -0.76 -3.24 -8.69 -10.72
SmLINC05850-IBu 0 -0.63 -1.38 -3.45 -5.11
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_050350.3 0 7.35 7.57 12.17 13.18

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_036270.4 SmLINC05850-IBu 0.91 1.64e-06 7.58e-05
Smp_050350.3 SmLINC05850-IBu -0.91 2.26e-06 9.50e-05
Smp_052280.2 SmLINC05850-IBu -0.92 6.93e-07 4.12e-05
Smp_055340.2 SmLINC05850-IBu -0.91 2.01e-06 8.74e-05
Smp_160230.1 SmLINC05850-IBu 0.95 4.95e-08 6.71e-06