Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC05845-IBu Data

Chromosome: SC 0037 - Coordinate: SC 0037:2042229-2053521 - Strand: -


Fig. S5 for SmLINC05845-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_185170.1 0 0.77 -2.29 -11.66 -11.66
Smp_185830.1 0 1.64 -1.15 -9.24 -11.35
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_205450.1 0 0.54 -1.87 -11.14 -11.14
Smp_125070.1 0 0.25 -4.98 -10.91 -10.91
Smp_185680.1 0 1.75 -5.39 -10.59 -10.59
Smp_204360.1 0 0.81 -0.39 -6.29 -10.08
Smp_184710.1 0 0.54 -2.76 -11.35 -9.04
SmLINC05845-IBu 0 1.91 -2.79 -8.03 -8.03
Smp_182090.1 0 0.34 -10.52 -4.07 -5.68

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_111640.1 SmLINC05845-IBu 0.91 1.24e-06 6.21e-05
Smp_125070.1 SmLINC05845-IBu 0.91 1.93e-06 8.48e-05
Smp_182090.1 SmLINC05845-IBu 0.91 2.45e-06 1.00e-04
Smp_184710.1 SmLINC05845-IBu 0.94 1.39e-07 1.35e-05
Smp_185170.1 SmLINC05845-IBu 0.90 2.81e-06 1.00e-04
Smp_185680.1 SmLINC05845-IBu 0.96 1.42e-08 2.89e-06
Smp_185830.1 SmLINC05845-IBu 0.98 1.28e-11 3.21e-08
Smp_204360.1 SmLINC05845-IBu 0.95 1.52e-08 3.03e-06
Smp_205450.1 SmLINC05845-IBu 0.92 1.10e-06 5.72e-05