Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC05840-IBu Data

Chromosome: SC 0037 - Coordinate: SC 0037:2038914-2049077 - Strand: -


Fig. 7A S3 for SmLINC05840-IBu with r ≥ 0.5 or r ≤ -0.5..

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_014400.1 0 -0.14 -0.99 -4.80 -5.29
SmLINC05840-IBu 0 1.40 -1.20 -2.41 -3.85

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_014400.1 SmLINC05840-IBu 0.8 3.00e-04 2.70e-03
Fig. 6A for SmLINC05840-IBu with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_185830.1 0 1.64 -1.15 -9.24 -11.35
Smp_193700.1 0 2.00 0.59 -11.32 -11.32
Smp_176230.2 0 0.48 -0.91 -5.65 -11.30
Smp_193990.1 0 2.54 2.04 -11.18 -11.18
Smp_125070.1 0 0.25 -4.98 -10.91 -10.91
Smp_111340.6 0 0.97 -0.72 -7.78 -9.70
Smp_179670.1 0 1.45 -1.30 -8.21 -9.30
Smp_184710.1 0 0.54 -2.76 -11.35 -9.04
Smp_169720.1 0 0.44 -8.54 -8.54 -8.54
Smp_035020.1 0 1.34 -0.55 -3.54 -8.45
Smp_200770.1 0 1.89 0.38 -8.15 -8.15
Smp_201280.1 0 0.50 0.74 -4.14 -8.03
Smp_186020.1 0 0.85 -2.69 -7.72 -7.80
Smp_113310.1 0 1.47 -2.62 -5.78 -7.51
Smp_161230.1 0 0.25 -1.38 -5.05 -7.28
Smp_195090.1 0 -0.26 -8.13 -2.45 -7.26
Smp_049300.4 0 1.54 -4.40 -4.53 -7.24
Smp_058680.1 0 -0.24 -3.97 -6.58 -7.11
Smp_203920.1 0 0.58 -2.39 -6.11 -7.08
Smp_200480.1 0 1.75 -1.49 -6.94 -6.94
Smp_123250.1 0 1.32 -1.61 -6.54 -6.89
Smp_193650.1 0 2.01 1.40 -6.66 -6.66
Smp_021460.1 0 1.05 -0.56 -1.99 -6.60
Smp_159610.1 0 2.56 -4.50 -4.50 -6.59
Smp_117620.1 0 0.28 -4.02 -5.77 -6.24
Smp_008390.1 0 0.53 -0.79 -6.20 -6.20
Smp_060760.1 0 3.40 -1.02 -6.08 -6.08
Smp_196000.1 0 -0.33 -2.00 -8.40 -5.93
Smp_062080.1 0 0.17 -4.18 -7.09 -5.78
Smp_069220.1 0 1.51 -0.88 -4.10 -5.76
Smp_203470.1 0 2.08 0.59 -0.78 -5.76
Smp_049300.2 0 0.52 -2.77 -4.62 -5.61
Smp_053760.1 0 0.29 -0.47 -5.24 -5.60
Smp_149750.1 0 1.75 -0.10 -5.34 -5.55
Smp_015190.1 0 0.66 -0.56 -4.33 -5.46
Smp_089860.1 0 4.05 -0.23 -9.08 -5.43
Smp_158310.1 0 -0.00 -0.69 -4.11 -5.43
Smp_014400.1 0 -0.14 -0.99 -4.80 -5.29
Smp_164170.1 0 0.21 -6.14 -4.30 -5.13
Smp_133830.1 0 0.07 -2.63 -3.15 -5.03
Smp_093740.2 0 1.50 0.51 -2.09 -4.86
Smp_142260.1 0 0.06 -0.92 -4.07 -4.74
Smp_202990.1 0 3.06 1.30 -2.66 -4.70
Smp_000250.1 0 2.54 -1.10 -4.67 -4.67
Smp_202780.1 0 1.88 -4.59 -1.14 -4.59
Smp_187010.1 0 0.47 -5.64 -3.81 -4.52
Smp_202720.1 0 1.95 -0.39 -4.65 -4.47
Smp_120920.2 0 -0.10 -2.98 -3.87 -4.44
Smp_017080.3 0 1.61 -1.79 -3.44 -4.38
Smp_079960.1 0 1.02 -1.37 -4.93 -4.30
Smp_204820.1 0 1.32 1.25 -3.19 -4.27
Smp_107590.1 0 4.34 2.46 -4.22 -4.22
Smp_049250.1 0 1.49 -2.10 -4.41 -4.17
Smp_157750.1 0 0.25 -0.37 -3.45 -4.12
Smp_005080.1 0 0.96 -0.03 -3.26 -4.08
Smp_160200.1 0 -0.04 -2.03 -4.28 -4.07
Smp_079280.1 0 1.10 0.35 -2.96 -4.05
Smp_048160.1 0 0.07 -1.17 -3.73 -4.00
Smp_097020.1 0 2.16 -2.18 -9.25 -3.98
Smp_202030.1 0 2.08 0.51 -3.93 -3.93
Smp_172460.1 0 0.84 -1.54 -4.74 -3.90
SmLINC05840-IBu 0 1.40 -1.20 -2.41 -3.85
Smp_159350.1 0 0.30 -0.77 -3.51 -3.83
Smp_033930.1 0 0.15 -3.24 -4.08 -3.67
Smp_080920.1 0 1.28 -1.93 -2.08 -3.64
Smp_142460.1 0 1.61 0.48 -3.34 -3.60
Smp_205030.1 0 0.40 -0.18 -3.74 -3.55
Smp_188780.1 0 0.05 -9.06 -3.40 -3.54
Smp_205000.1 0 4.78 1.99 -1.34 -3.44
Smp_196680.1 0 1.62 -1.20 -4.44 -3.36
Smp_164270.1 0 1.19 0.27 -2.73 -3.35
Smp_106930.1 0 3.72 0.12 -3.92 -3.35
Smp_148840.1 0 1.21 -1.89 -2.48 -3.29
Smp_080920.2 0 2.36 -1.44 -1.25 -3.25
Smp_171610.1 0 0.35 -0.62 -4.59 -3.11
Smp_138890.1 0 2.00 0.89 -2.07 -3.06
Smp_084210.1 0 0.94 -0.62 -4.01 -2.94
Smp_103140.1 0 2.18 -1.88 -1.44 -2.80
Smp_124140.1 0 2.40 0.33 -1.66 -2.77
Smp_049300.3 0 1.86 -0.79 -4.47 -2.75
Smp_171540.2 0 1.44 -2.06 -3.96 -2.73
Smp_202560.1 0 4.87 -1.17 -2.65 -2.65
Smp_201230.1 0 1.72 -0.34 -3.72 -2.51
Smp_032280.1 0 2.61 1.80 -2.26 -2.27
Smp_205220.1 0 2.68 1.94 -1.09 -2.07
Smp_202230.1 0 5.69 2.03 -1.93 -1.93
Smp_164180.1 0 3.02 1.05 -0.21 -1.81
Smp_142120.1 0 2.79 0.55 -2.29 -1.47
Smp_200600.1 0 3.98 2.91 -2.23 -1.39
Smp_179390.1 0 2.87 -2.17 -1.54 -0.29
Smp_143450.1 0 6.96 3.27 0.00 0.00
Smp_048060.1 0 5.72 0.00 0.00 0.00
Smp_203550.1 0 6.10 1.47 2.03 0.00
Smp_145100.1 0 5.41 1.47 0.00 0.00
Smp_204950.1 0 5.97 5.20 0.00 0.00
Smp_204190.1 0 3.21 -3.16 -0.75 1.19
Smp_204650.1 0 7.45 2.61 0.00 2.29
Smp_201000.1 0 6.84 0.00 2.13 2.38
Smp_139700.1 0 6.89 4.15 2.03 5.39

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000250.1 SmLINC05840-IBu 0.80 2.00e-04 2.80e-03
Smp_005080.1 SmLINC05840-IBu 0.87 1.52e-05 3.00e-04
Smp_008390.1 SmLINC05840-IBu 0.87 1.95e-05 4.00e-04
Smp_014400.1 SmLINC05840-IBu 0.80 3.00e-04 3.30e-03
Smp_015190.1 SmLINC05840-IBu 0.90 4.55e-06 1.00e-04
Smp_017080.3 SmLINC05840-IBu 0.88 1.38e-05 3.00e-04
Smp_021460.1 SmLINC05840-IBu 0.94 1.00e-07 1.03e-05
Smp_032280.1 SmLINC05840-IBu 0.80 3.00e-04 3.30e-03
Smp_033930.1 SmLINC05840-IBu 0.94 1.19e-07 1.16e-05
Smp_035020.1 SmLINC05840-IBu 0.91 2.14e-06 8.82e-05
Smp_048060.1 SmLINC05840-IBu 0.90 3.66e-06 1.00e-04
Smp_048160.1 SmLINC05840-IBu 0.87 1.64e-05 3.00e-04
Smp_049250.1 SmLINC05840-IBu 0.82 1.00e-04 2.00e-03
Smp_049300.2 SmLINC05840-IBu 0.81 2.00e-04 2.30e-03
Smp_049300.3 SmLINC05840-IBu 0.91 1.24e-06 6.00e-05
Smp_049300.4 SmLINC05840-IBu 0.83 1.00e-04 1.60e-03
Smp_053760.1 SmLINC05840-IBu 0.82 1.00e-04 2.10e-03
Smp_058680.1 SmLINC05840-IBu 0.86 3.68e-05 6.00e-04
Smp_060760.1 SmLINC05840-IBu 0.83 9.91e-05 1.40e-03
Smp_062080.1 SmLINC05840-IBu 0.86 2.89e-05 5.00e-04
Smp_069220.1 SmLINC05840-IBu 0.91 1.49e-06 6.81e-05
Smp_079280.1 SmLINC05840-IBu 0.86 2.48e-05 5.00e-04
Smp_079960.1 SmLINC05840-IBu 0.92 6.75e-07 3.88e-05
Smp_080920.1 SmLINC05840-IBu 0.88 1.14e-05 2.00e-04
Smp_080920.2 SmLINC05840-IBu 0.82 1.00e-04 1.80e-03
Smp_084210.1 SmLINC05840-IBu 0.86 3.82e-05 7.00e-04
Smp_089860.1 SmLINC05840-IBu 0.82 1.00e-04 1.90e-03
Smp_093740.2 SmLINC05840-IBu 0.83 1.00e-04 1.50e-03
Smp_097020.1 SmLINC05840-IBu 0.86 2.50e-05 5.00e-04
Smp_103140.1 SmLINC05840-IBu 0.98 3.05e-11 5.03e-08
Smp_106930.1 SmLINC05840-IBu 0.92 5.76e-07 3.47e-05
Smp_107590.1 SmLINC05840-IBu 0.83 1.00e-04 1.50e-03
Smp_111340.6 SmLINC05840-IBu 0.86 3.57e-05 6.00e-04
Smp_113310.1 SmLINC05840-IBu 0.88 1.43e-05 3.00e-04
Smp_117620.1 SmLINC05840-IBu 0.80 2.00e-04 2.80e-03
Smp_120920.2 SmLINC05840-IBu 0.80 3.00e-04 3.40e-03
Smp_123250.1 SmLINC05840-IBu 0.85 5.94e-05 9.00e-04
Smp_124140.1 SmLINC05840-IBu 0.81 1.00e-04 2.20e-03
Smp_125070.1 SmLINC05840-IBu 0.84 6.87e-05 1.00e-03
Smp_133830.1 SmLINC05840-IBu 0.85 5.87e-05 9.00e-04
Smp_138890.1 SmLINC05840-IBu 0.82 1.00e-04 2.00e-03
Smp_139700.1 SmLINC05840-IBu 0.82 1.00e-04 1.90e-03
Smp_142120.1 SmLINC05840-IBu 0.83 1.00e-04 1.50e-03
Smp_142260.1 SmLINC05840-IBu 0.85 4.54e-05 7.00e-04
Smp_142460.1 SmLINC05840-IBu 0.86 2.52e-05 5.00e-04
Smp_143450.1 SmLINC05840-IBu 0.94 9.36e-08 9.80e-06
Smp_145100.1 SmLINC05840-IBu 0.91 1.30e-06 6.19e-05
Smp_148840.1 SmLINC05840-IBu 0.96 2.66e-09 8.91e-07
Smp_149750.1 SmLINC05840-IBu 0.87 1.76e-05 4.00e-04
Smp_157750.1 SmLINC05840-IBu 0.80 2.00e-04 2.90e-03
Smp_158310.1 SmLINC05840-IBu 0.81 2.00e-04 2.40e-03
Smp_159350.1 SmLINC05840-IBu 0.90 4.84e-06 1.00e-04
Smp_159610.1 SmLINC05840-IBu 0.84 6.00e-05 9.00e-04
Smp_160200.1 SmLINC05840-IBu 0.84 6.78e-05 1.00e-03
Smp_161230.1 SmLINC05840-IBu 0.85 4.90e-05 8.00e-04
Smp_164170.1 SmLINC05840-IBu 0.84 8.02e-05 1.20e-03
Smp_164180.1 SmLINC05840-IBu 0.87 2.26e-05 4.00e-04
Smp_164270.1 SmLINC05840-IBu 0.87 1.71e-05 3.00e-04
Smp_169720.1 SmLINC05840-IBu 0.80 3.00e-04 3.40e-03
Smp_171540.2 SmLINC05840-IBu 0.91 1.42e-06 6.58e-05
Smp_171610.1 SmLINC05840-IBu 0.80 2.00e-04 3.10e-03
Smp_172460.1 SmLINC05840-IBu 0.83 1.00e-04 1.60e-03
Smp_176230.2 SmLINC05840-IBu 0.91 2.19e-06 8.98e-05
Smp_179390.1 SmLINC05840-IBu 0.87 2.40e-05 5.00e-04
Smp_179670.1 SmLINC05840-IBu 0.93 3.63e-07 2.51e-05
Smp_184710.1 SmLINC05840-IBu 0.83 1.00e-04 1.50e-03
Smp_185830.1 SmLINC05840-IBu 0.82 1.00e-04 2.00e-03
Smp_186020.1 SmLINC05840-IBu 0.84 8.34e-05 1.20e-03
Smp_187010.1 SmLINC05840-IBu 0.90 4.27e-06 1.00e-04
Smp_188780.1 SmLINC05840-IBu 0.85 4.76e-05 8.00e-04
Smp_193650.1 SmLINC05840-IBu 0.81 2.00e-04 2.70e-03
Smp_193700.1 SmLINC05840-IBu 0.91 1.90e-06 8.12e-05
Smp_193990.1 SmLINC05840-IBu 0.84 6.99e-05 1.00e-03
Smp_195090.1 SmLINC05840-IBu 0.81 1.00e-04 2.20e-03
Smp_196000.1 SmLINC05840-IBu 0.81 2.00e-04 2.70e-03
Smp_196680.1 SmLINC05840-IBu 0.97 2.28e-09 8.05e-07
Smp_200480.1 SmLINC05840-IBu 0.89 7.41e-06 2.00e-04
Smp_200600.1 SmLINC05840-IBu 0.87 2.20e-05 4.00e-04
Smp_200770.1 SmLINC05840-IBu 0.88 1.46e-05 3.00e-04
Smp_201000.1 SmLINC05840-IBu 0.89 8.39e-06 2.00e-04
Smp_201230.1 SmLINC05840-IBu 0.92 9.51e-07 4.95e-05
Smp_201280.1 SmLINC05840-IBu 0.81 2.00e-04 2.60e-03
Smp_202030.1 SmLINC05840-IBu 0.85 5.17e-05 8.00e-04
Smp_202230.1 SmLINC05840-IBu 0.93 4.05e-07 2.71e-05
Smp_202560.1 SmLINC05840-IBu 0.92 8.80e-07 4.68e-05
Smp_202720.1 SmLINC05840-IBu 0.96 1.04e-08 2.19e-06
Smp_202780.1 SmLINC05840-IBu 0.88 1.49e-05 3.00e-04
Smp_202990.1 SmLINC05840-IBu 0.89 7.54e-06 2.00e-04
Smp_203470.1 SmLINC05840-IBu 0.86 2.71e-05 5.00e-04
Smp_203550.1 SmLINC05840-IBu 0.93 3.98e-07 2.68e-05
Smp_203920.1 SmLINC05840-IBu 0.80 2.00e-04 3.00e-03
Smp_204190.1 SmLINC05840-IBu 0.83 1.00e-04 1.60e-03
Smp_204650.1 SmLINC05840-IBu 0.86 3.68e-05 6.00e-04
Smp_204820.1 SmLINC05840-IBu 0.81 2.00e-04 2.50e-03
Smp_204950.1 SmLINC05840-IBu 0.81 2.00e-04 2.60e-03
Smp_205000.1 SmLINC05840-IBu 0.85 4.29e-05 7.00e-04
Smp_205030.1 SmLINC05840-IBu 0.86 2.93e-05 5.00e-04
Smp_205220.1 SmLINC05840-IBu 0.93 3.62e-07 2.51e-05
Fig. S5 for SmLINC05840-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_193700.1 0 2.00 0.59 -11.32 -11.32
Smp_176230.2 0 0.48 -0.91 -5.65 -11.30
SmLINC05840-IBu 0 1.40 -1.20 -2.41 -3.85

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_176230.2 SmLINC05840-IBu 0.91 2.19e-06 9.29e-05
Smp_193700.1 SmLINC05840-IBu 0.91 1.90e-06 8.41e-05