Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC05755-IBu Data

Chromosome: SC 0013 - Coordinate: SC 0013:2349057-2361816 - Strand: -


Fig. S5 for SmLINC05755-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_056360.3 0 -9.92 -10.13 2.08 1.89
Smp_128510.1 0 3.20 1.49 10.55 5.33
SmLINC05755-IBu 0 2.95 0.00 6.65 5.54
Smp_017610.1 0 -3.10 2.10 11.36 6.75
Smp_160360.1 0 0.49 1.23 10.10 7.29
Smp_197400.1 0 0.00 0.00 10.12 7.45
Smp_163940.1 0 2.69 6.26 10.12 8.26
Smp_131840.1 0 1.87 2.16 10.14 8.34
Smp_084270.1 0 3.51 4.06 10.11 8.38
Smp_200750.1 0 1.72 7.25 10.11 8.83
Smp_154190.1 0 -1.93 -1.93 10.13 8.88
Smp_134960.1 0 -1.83 4.14 10.34 9.04
Smp_118560.1 0 6.31 8.12 10.54 9.19
Smp_125200.1 0 0.00 7.38 10.66 9.27
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_175020.1 0 5.88 8.81 11.73 9.58
Smp_105730.1 0 0.00 0.00 11.80 9.62
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_205270.1 0 0.71 -0.40 10.02 9.83
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_164550.1 0 5.78 6.30 11.08 9.99
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_194980.1 0 2.89 8.17 12.59 10.55
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_034980.2 0 8.75 0.00 11.30 11.03
Smp_068270.1 0 0.21 0.34 12.30 11.22
Smp_123200.1 0 0.00 0.00 12.38 11.42
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_154180.1 0 5.56 0.00 15.37 13.48
Smp_194970.1 0 6.28 10.15 15.43 13.82
Smp_194960.1 0 0.00 0.00 17.20 15.87

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_017610.1 SmLINC05755-IBu 0.95 1.67e-08 3.21e-06
Smp_034980.2 SmLINC05755-IBu 0.93 4.50e-07 3.05e-05
Smp_045200.1 SmLINC05755-IBu 0.95 5.18e-08 6.92e-06
Smp_056360.3 SmLINC05755-IBu 0.90 4.86e-06 1.00e-04
Smp_058660.1 SmLINC05755-IBu 0.92 5.35e-07 3.44e-05
Smp_068270.1 SmLINC05755-IBu 0.97 3.66e-10 2.68e-07
Smp_082580.1 SmLINC05755-IBu 0.94 1.91e-07 1.69e-05
Smp_084270.1 SmLINC05755-IBu 0.98 1.65e-10 1.60e-07
Smp_105730.1 SmLINC05755-IBu 0.94 1.45e-07 1.39e-05
Smp_118560.1 SmLINC05755-IBu 0.93 4.15e-07 2.89e-05
Smp_123200.1 SmLINC05755-IBu 0.94 1.49e-07 1.42e-05
Smp_125200.1 SmLINC05755-IBu 0.93 4.18e-07 2.90e-05
Smp_125210.1 SmLINC05755-IBu 0.97 1.92e-10 1.76e-07
Smp_128510.1 SmLINC05755-IBu 0.95 1.83e-08 3.42e-06
Smp_131840.1 SmLINC05755-IBu 0.92 1.15e-06 5.91e-05
Smp_134960.1 SmLINC05755-IBu 0.96 2.52e-09 9.25e-07
Smp_137320.1 SmLINC05755-IBu 0.93 3.02e-07 2.31e-05
Smp_141680.1 SmLINC05755-IBu 0.92 8.55e-07 4.78e-05
Smp_150980.2 SmLINC05755-IBu 0.90 3.29e-06 1.00e-04
Smp_154180.1 SmLINC05755-IBu 0.91 2.22e-06 9.38e-05
Smp_154190.1 SmLINC05755-IBu 0.93 2.15e-07 1.83e-05
Smp_160360.1 SmLINC05755-IBu 0.95 1.52e-08 3.02e-06
Smp_163940.1 SmLINC05755-IBu 0.92 1.14e-06 5.86e-05
Smp_164550.1 SmLINC05755-IBu 0.97 2.04e-09 8.08e-07
Smp_170280.1 SmLINC05755-IBu 0.97 6.52e-10 3.87e-07
Smp_172480.1 SmLINC05755-IBu 0.91 1.38e-06 6.71e-05
Smp_175020.1 SmLINC05755-IBu 0.95 3.44e-08 5.24e-06
Smp_194960.1 SmLINC05755-IBu 0.95 2.17e-08 3.84e-06
Smp_194970.1 SmLINC05755-IBu 0.94 1.15e-07 1.19e-05
Smp_194980.1 SmLINC05755-IBu 0.92 7.80e-07 4.48e-05
Smp_197400.1 SmLINC05755-IBu 0.94 1.26e-07 1.26e-05
Smp_200750.1 SmLINC05755-IBu 0.97 2.91e-10 2.31e-07
Smp_205270.1 SmLINC05755-IBu 0.92 6.82e-07 4.08e-05