Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC05749-IBu Data

Chromosome: SC 0013 - Coordinate: SC 0013:2341856-2356642 - Strand: -


Fig. S5 for SmLINC05749-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_035200.3 0 -0.02 -1.98 -15.09 -15.09
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_185830.1 0 1.64 -1.15 -9.24 -11.35
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_205450.1 0 0.54 -1.87 -11.14 -11.14
Smp_125070.1 0 0.25 -4.98 -10.91 -10.91
Smp_204360.1 0 0.81 -0.39 -6.29 -10.08
Smp_184710.1 0 0.54 -2.76 -11.35 -9.04
Smp_205330.1 0 0.40 -0.14 -11.58 -8.81
Smp_032970.1 0 -0.24 -2.98 -11.57 -7.79
SmLINC05749-IBu 0 0.17 -1.59 -4.81 -5.79
Smp_182090.1 0 0.34 -10.52 -4.07 -5.68

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032970.1 SmLINC05749-IBu 0.93 2.61e-07 2.09e-05
Smp_035200.3 SmLINC05749-IBu 0.90 4.55e-06 1.00e-04
Smp_036270.4 SmLINC05749-IBu 0.94 6.57e-08 8.12e-06
Smp_111640.1 SmLINC05749-IBu 0.95 1.60e-08 3.13e-06
Smp_125070.1 SmLINC05749-IBu 0.96 1.14e-08 2.50e-06
Smp_182090.1 SmLINC05749-IBu 0.91 2.09e-06 8.97e-05
Smp_184710.1 SmLINC05749-IBu 0.96 9.22e-09 2.16e-06
Smp_185830.1 SmLINC05749-IBu 0.91 2.42e-06 9.97e-05
Smp_204360.1 SmLINC05749-IBu 0.94 1.25e-07 1.26e-05
Smp_205330.1 SmLINC05749-IBu 0.92 9.85e-07 5.28e-05
Smp_205450.1 SmLINC05749-IBu 0.91 1.82e-06 8.14e-05