Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC05746-IBu Data

Chromosome: SC 0013 - Coordinate: SC 0013:2156069-2158567 - Strand: +


Fig. S5 for SmLINC05746-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC05746-IBu 0 1.84 0.26 4.70 1.98
Smp_128510.1 0 3.20 1.49 10.55 5.33
Smp_017610.1 0 -3.10 2.10 11.36 6.75
Smp_160360.1 0 0.49 1.23 10.10 7.29
Smp_197400.1 0 0.00 0.00 10.12 7.45
Smp_141480.1 0 7.59 4.10 10.61 8.33
Smp_084270.1 0 3.51 4.06 10.11 8.38
Smp_154190.1 0 -1.93 -1.93 10.13 8.88
Smp_118560.1 0 6.31 8.12 10.54 9.19
Smp_175020.1 0 5.88 8.81 11.73 9.58
Smp_105730.1 0 0.00 0.00 11.80 9.62
Smp_164550.1 0 5.78 6.30 11.08 9.99
Smp_125210.1 0 5.44 5.31 11.82 10.51

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_017610.1 SmLINC05746-IBu 0.94 1.43e-07 1.38e-05
Smp_084270.1 SmLINC05746-IBu 0.91 2.04e-06 8.84e-05
Smp_105730.1 SmLINC05746-IBu 0.91 2.31e-06 9.64e-05
Smp_118560.1 SmLINC05746-IBu 0.90 4.74e-06 1.00e-04
Smp_125210.1 SmLINC05746-IBu 0.90 3.07e-06 1.00e-04
Smp_128510.1 SmLINC05746-IBu 0.93 3.27e-07 2.44e-05
Smp_141480.1 SmLINC05746-IBu 0.91 2.13e-06 9.10e-05
Smp_154190.1 SmLINC05746-IBu 0.90 3.51e-06 1.00e-04
Smp_160360.1 SmLINC05746-IBu 0.93 2.38e-07 1.96e-05
Smp_164550.1 SmLINC05746-IBu 0.91 1.60e-06 7.45e-05
Smp_175020.1 SmLINC05746-IBu 0.91 1.73e-06 7.85e-05
Smp_197400.1 SmLINC05746-IBu 0.92 7.14e-07 4.21e-05