Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC05704-IBu Data

Chromosome: SC 0013 - Coordinate: SC 0013:458277-460874 - Strand: -


Fig. S5 for SmLINC05704-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC05704-IBu 0 -0.96 -2.90 3.11 2.23
Smp_128510.1 0 3.20 1.49 10.55 5.33
Smp_017610.1 0 -3.10 2.10 11.36 6.75
Smp_160360.1 0 0.49 1.23 10.10 7.29
Smp_197400.1 0 0.00 0.00 10.12 7.45
Smp_163940.1 0 2.69 6.26 10.12 8.26
Smp_131840.1 0 1.87 2.16 10.14 8.34
Smp_084270.1 0 3.51 4.06 10.11 8.38
Smp_200750.1 0 1.72 7.25 10.11 8.83
Smp_154190.1 0 -1.93 -1.93 10.13 8.88
Smp_134960.1 0 -1.83 4.14 10.34 9.04
Smp_118560.1 0 6.31 8.12 10.54 9.19
Smp_005470.1 0 4.39 7.68 10.83 9.26
Smp_125200.1 0 0.00 7.38 10.66 9.27
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_172520.1 0 3.57 6.60 11.28 9.54
Smp_175020.1 0 5.88 8.81 11.73 9.58
Smp_105730.1 0 0.00 0.00 11.80 9.62
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_205270.1 0 0.71 -0.40 10.02 9.83
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_164550.1 0 5.78 6.30 11.08 9.99
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_194980.1 0 2.89 8.17 12.59 10.55
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_068270.1 0 0.21 0.34 12.30 11.22
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_123200.1 0 0.00 0.00 12.38 11.42
Smp_014780.1 0 9.27 11.17 13.92 13.01
Smp_154180.1 0 5.56 0.00 15.37 13.48
Smp_194970.1 0 6.28 10.15 15.43 13.82
Smp_194960.1 0 0.00 0.00 17.20 15.87

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_005470.1 SmLINC05704-IBu 0.90 4.79e-06 1.00e-04
Smp_014780.1 SmLINC05704-IBu 0.90 4.45e-06 1.00e-04
Smp_017610.1 SmLINC05704-IBu 0.93 2.33e-07 1.93e-05
Smp_045200.1 SmLINC05704-IBu 0.95 3.80e-08 5.61e-06
Smp_058660.1 SmLINC05704-IBu 0.95 3.37e-08 5.17e-06
Smp_068270.1 SmLINC05704-IBu 0.96 6.82e-09 1.77e-06
Smp_082580.1 SmLINC05704-IBu 0.95 1.79e-08 3.37e-06
Smp_084270.1 SmLINC05704-IBu 0.97 2.24e-10 1.95e-07
Smp_105730.1 SmLINC05704-IBu 0.94 1.87e-07 1.66e-05
Smp_118560.1 SmLINC05704-IBu 0.95 5.91e-08 7.56e-06
Smp_123200.1 SmLINC05704-IBu 0.96 5.52e-09 1.54e-06
Smp_125200.1 SmLINC05704-IBu 0.90 3.32e-06 1.00e-04
Smp_125210.1 SmLINC05704-IBu 0.98 1.05e-10 1.20e-07
Smp_128510.1 SmLINC05704-IBu 0.94 1.67e-07 1.53e-05
Smp_131840.1 SmLINC05704-IBu 0.92 9.62e-07 5.19e-05
Smp_134960.1 SmLINC05704-IBu 0.97 1.44e-09 6.45e-07
Smp_137320.1 SmLINC05704-IBu 0.96 1.29e-08 2.70e-06
Smp_141680.1 SmLINC05704-IBu 0.95 3.09e-08 4.87e-06
Smp_145400.1 SmLINC05704-IBu 0.91 1.77e-06 7.98e-05
Smp_151120.1 SmLINC05704-IBu 0.92 6.99e-07 4.15e-05
Smp_154180.1 SmLINC05704-IBu 0.91 2.25e-06 9.46e-05
Smp_154190.1 SmLINC05704-IBu 0.90 2.86e-06 1.00e-04
Smp_160360.1 SmLINC05704-IBu 0.93 2.96e-07 2.28e-05
Smp_163940.1 SmLINC05704-IBu 0.93 2.49e-07 2.03e-05
Smp_164550.1 SmLINC05704-IBu 0.94 1.05e-07 1.12e-05
Smp_170280.1 SmLINC05704-IBu 0.98 3.07e-11 5.55e-08
Smp_172480.1 SmLINC05704-IBu 0.91 1.50e-06 7.12e-05
Smp_172520.1 SmLINC05704-IBu 0.90 4.15e-06 1.00e-04
Smp_175020.1 SmLINC05704-IBu 0.94 6.66e-08 8.20e-06
Smp_194960.1 SmLINC05704-IBu 0.96 8.52e-09 2.05e-06
Smp_194970.1 SmLINC05704-IBu 0.95 2.40e-08 4.11e-06
Smp_194980.1 SmLINC05704-IBu 0.94 1.92e-07 1.69e-05
Smp_197400.1 SmLINC05704-IBu 0.93 4.04e-07 2.83e-05
Smp_200750.1 SmLINC05704-IBu 0.98 6.33e-11 8.73e-08
Smp_205270.1 SmLINC05704-IBu 0.93 3.15e-07 2.38e-05