Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC05685-IBu Data

Chromosome: Chr ZW.unplaced.SC 0185 - Coordinate: Chr ZW.unplaced.SC 0185:150506-152914 - Strand: +


Fig. 7A S3 for SmLINC05685-IBu with r ≥ 0.5 or r ≤ -0.5..

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_075430.1 0 1.59 -3.18 0.03 2.14
Smp_204390.1 0 1.69 0.93 3.73 4.78
SmLINC05685-IBu 0 5.64 5.26 5.37 7.19

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_075430.1 SmLINC05685-IBu 0.82 1.00e-04 1.60e-03
Smp_204390.1 SmLINC05685-IBu 0.61 1.39e-02 4.42e-02
Fig. 6A for SmLINC05685-IBu with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_075430.1 0 1.59 -3.18 0.03 2.14
Smp_200440.1 0 1.00 0.69 3.32 4.08
Smp_132780.1 0 4.48 3.04 4.57 6.84
SmLINC05685-IBu 0 5.64 5.26 5.37 7.19

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_075430.1 SmLINC05685-IBu 0.82 1.00e-04 2.00e-03
Smp_132780.1 SmLINC05685-IBu 0.86 3.40e-05 6.00e-04
Smp_200440.1 SmLINC05685-IBu 0.82 1.00e-04 1.80e-03