Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC05670-IBu Data

Chromosome: Chr ZW.unplaced.SC 0115 - Coordinate: Chr ZW.unplaced.SC 0115:593891-594778 - Strand: -


Fig. S5 for SmLINC05670-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_153240.1 0 -4.59 -8.67 -11.23 -11.04
Smp_016200.1 0 -3.14 -11.01 -6.75 -11.01
Smp_178240.1 0 -3.79 -9.33 -8.87 -11.00
Smp_044280.2 0 -10.78 -4.06 -10.78 -10.78
Smp_035270.1 0 -9.88 -14.08 -13.91 -7.32
Smp_106390.1 0 -2.35 -4.90 -10.78 -6.23
SmLINC05670-IBu 0 -3.35 -5.02 -2.57 -4.14

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_016200.1 SmLINC05670-IBu 0.93 3.31e-07 2.47e-05
Smp_035270.1 SmLINC05670-IBu 0.94 8.70e-08 9.84e-06
Smp_044280.2 SmLINC05670-IBu 0.92 1.07e-06 5.61e-05
Smp_106390.1 SmLINC05670-IBu 0.91 2.28e-06 9.55e-05
Smp_153240.1 SmLINC05670-IBu 0.90 2.74e-06 1.00e-04
Smp_178240.1 SmLINC05670-IBu 0.92 7.48e-07 4.35e-05