Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC05663-IBu Data

Chromosome: Chr ZW.unplaced.SC 0115 - Coordinate: Chr ZW.unplaced.SC 0115:355622-358653 - Strand: +


Fig. S5 for SmLINC05663-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_184760.1 0 -0.25 -4.83 -11.75 -14.03
Smp_203100.1 0 0.53 -3.27 -9.59 -11.66
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_032320.1 0 1.14 -10.97 -10.97 -10.97
Smp_112090.1 0 0.15 -7.44 -10.10 -10.10
Smp_203380.1 0 0.51 -4.20 -12.37 -9.65
SmLINC05663-IBu 0 0.72 -2.30 -7.21 -6.28

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032320.1 SmLINC05663-IBu 0.92 5.61e-07 3.56e-05
Smp_111640.1 SmLINC05663-IBu 0.90 3.46e-06 1.00e-04
Smp_112090.1 SmLINC05663-IBu 0.91 2.34e-06 9.71e-05
Smp_184760.1 SmLINC05663-IBu 0.91 2.29e-06 9.58e-05
Smp_203100.1 SmLINC05663-IBu 0.90 3.91e-06 1.00e-04
Smp_203380.1 SmLINC05663-IBu 0.91 1.26e-06 6.28e-05