Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC05660-IBu Data

Chromosome: Chr ZW.unplaced.SC 0115 - Coordinate: Chr ZW.unplaced.SC 0115:122832-126655 - Strand: +


Fig. S5 for SmLINC05660-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_059530.1 0 2.86 3.32 -11.10 -11.10
Smp_034840.1 0 12.23 13.88 0.00 0.00
Smp_083380.2 0 9.13 10.31 0.00 0.00
SmLINC05660-IBu 0 5.07 6.19 0.00 6.57
Smp_062070.1 0 9.47 10.97 6.18 8.79
Smp_084940.2 0 10.34 11.98 9.66 9.92

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_034840.1 SmLINC05660-IBu 0.92 1.13e-06 5.82e-05
Smp_059530.1 SmLINC05660-IBu 0.90 3.46e-06 1.00e-04
Smp_062070.1 SmLINC05660-IBu 0.90 3.46e-06 1.00e-04
Smp_083380.2 SmLINC05660-IBu 0.92 5.29e-07 3.41e-05
Smp_084940.2 SmLINC05660-IBu 0.91 1.25e-06 6.26e-05