Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC05607-IBu Data

Chromosome: Chr ZW - Coordinate: Chr ZW:57179934-57180696 - Strand: -


Fig. S5 for SmLINC05607-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC05607-IBu 0 0.00 3.28 6.42 7.76
Smp_194380.1 0 2.98 2.11 7.89 10.14
Smp_203030.1 0 2.55 0.41 8.36 10.39
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_196830.1 0 -0.76 0.59 8.97 10.89
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_123880.1 0 1.71 4.05 9.88 12.08
Smp_164320.1 0 0.97 4.76 9.93 12.08
Smp_156930.1 0 0.00 0.00 11.62 12.40
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_085180.1 0 1.48 5.09 10.70 12.92
Smp_083430.1 0 4.18 6.49 11.73 13.40
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_131410.1 0 3.39 4.65 11.85 14.02
Smp_007950.1 0 5.54 7.26 12.66 14.89

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_007950.1 SmLINC05607-IBu 0.90 2.95e-06 1.00e-04
Smp_016490.2 SmLINC05607-IBu 0.91 1.37e-06 6.69e-05
Smp_028870.1 SmLINC05607-IBu 0.91 1.85e-06 8.24e-05
Smp_037720.1 SmLINC05607-IBu 0.93 2.87e-07 2.23e-05
Smp_083430.1 SmLINC05607-IBu 0.92 5.73e-07 3.61e-05
Smp_085180.1 SmLINC05607-IBu 0.90 3.66e-06 1.00e-04
Smp_102780.1 SmLINC05607-IBu 0.91 1.56e-06 7.30e-05
Smp_123880.1 SmLINC05607-IBu 0.91 1.96e-06 8.57e-05
Smp_130100.1 SmLINC05607-IBu 0.90 2.97e-06 1.00e-04
Smp_131410.1 SmLINC05607-IBu 0.92 1.07e-06 5.61e-05
Smp_137810.1 SmLINC05607-IBu 0.93 3.27e-07 2.45e-05
Smp_140720.1 SmLINC05607-IBu 0.91 1.33e-06 6.55e-05
Smp_155570.1 SmLINC05607-IBu 0.95 2.75e-08 4.50e-06
Smp_156930.1 SmLINC05607-IBu 0.91 1.27e-06 6.31e-05
Smp_164320.1 SmLINC05607-IBu 0.92 9.81e-07 5.26e-05
Smp_187140.1 SmLINC05607-IBu 0.90 4.65e-06 1.00e-04
Smp_194380.1 SmLINC05607-IBu 0.90 3.21e-06 1.00e-04
Smp_196830.1 SmLINC05607-IBu 0.93 3.00e-07 2.30e-05
Smp_202610.1 SmLINC05607-IBu 0.93 2.61e-07 2.09e-05
Smp_203030.1 SmLINC05607-IBu 0.92 1.10e-06 5.72e-05