Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC05586-IBu Data

Chromosome: Chr ZW - Coordinate: Chr ZW:55291032-55294233 - Strand: +


Fig. S5 for SmLINC05586-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_035200.3 0 -0.02 -1.98 -15.09 -15.09
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_185170.1 0 0.77 -2.29 -11.66 -11.66
Smp_185830.1 0 1.64 -1.15 -9.24 -11.35
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_205450.1 0 0.54 -1.87 -11.14 -11.14
Smp_125070.1 0 0.25 -4.98 -10.91 -10.91
Smp_112090.1 0 0.15 -7.44 -10.10 -10.10
Smp_204360.1 0 0.81 -0.39 -6.29 -10.08
Smp_184710.1 0 0.54 -2.76 -11.35 -9.04
SmLINC05586-IBu 0 0.17 -1.90 -6.28 -7.97
Smp_032970.1 0 -0.24 -2.98 -11.57 -7.79
Smp_182090.1 0 0.34 -10.52 -4.07 -5.68

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032970.1 SmLINC05586-IBu 0.93 3.66e-07 2.64e-05
Smp_035200.3 SmLINC05586-IBu 0.92 1.18e-06 6.00e-05
Smp_036270.4 SmLINC05586-IBu 0.96 2.55e-09 9.32e-07
Smp_111640.1 SmLINC05586-IBu 0.97 9.34e-10 4.88e-07
Smp_112090.1 SmLINC05586-IBu 0.94 1.18e-07 1.21e-05
Smp_125070.1 SmLINC05586-IBu 0.93 2.38e-07 1.96e-05
Smp_182090.1 SmLINC05586-IBu 0.90 3.38e-06 1.00e-04
Smp_184710.1 SmLINC05586-IBu 0.97 4.90e-10 3.22e-07
Smp_185170.1 SmLINC05586-IBu 0.92 7.98e-07 4.55e-05
Smp_185830.1 SmLINC05586-IBu 0.93 3.00e-07 2.30e-05
Smp_204360.1 SmLINC05586-IBu 0.96 1.12e-08 2.46e-06
Smp_205450.1 SmLINC05586-IBu 0.95 1.73e-08 3.29e-06