Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC05572-IBu Data

Chromosome: Chr ZW - Coordinate: Chr ZW:54332983-54334374 - Strand: +


Fig. S5 for SmLINC05572-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_035200.3 0 -0.02 -1.98 -15.09 -15.09
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_185170.1 0 0.77 -2.29 -11.66 -11.66
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_205450.1 0 0.54 -1.87 -11.14 -11.14
Smp_160230.1 0 -0.76 -3.24 -8.69 -10.72
Smp_204360.1 0 0.81 -0.39 -6.29 -10.08
SmLINC05572-IBu 0 0.06 -1.32 -4.02 -9.37
Smp_184710.1 0 0.54 -2.76 -11.35 -9.04

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_035200.3 SmLINC05572-IBu 0.93 3.04e-07 2.33e-05
Smp_036270.4 SmLINC05572-IBu 0.94 1.36e-07 1.33e-05
Smp_111640.1 SmLINC05572-IBu 0.96 4.87e-09 1.42e-06
Smp_160230.1 SmLINC05572-IBu 0.91 2.02e-06 8.78e-05
Smp_184710.1 SmLINC05572-IBu 0.96 3.20e-09 1.07e-06
Smp_185170.1 SmLINC05572-IBu 0.94 1.58e-07 1.48e-05
Smp_204360.1 SmLINC05572-IBu 0.92 8.84e-07 4.89e-05
Smp_205450.1 SmLINC05572-IBu 0.94 6.65e-08 8.19e-06