Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC05552-IBu Data

Chromosome: Chr ZW - Coordinate: Chr ZW:52187254-52189271 - Strand: +


Fig. S5 for SmLINC05552-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC05552-IBu 0 -0.60 -4.00 3.61 2.81
Smp_197400.1 0 0.00 0.00 10.12 7.45
Smp_131840.1 0 1.87 2.16 10.14 8.34
Smp_154190.1 0 -1.93 -1.93 10.13 8.88
Smp_134960.1 0 -1.83 4.14 10.34 9.04
Smp_118560.1 0 6.31 8.12 10.54 9.19
Smp_005470.1 0 4.39 7.68 10.83 9.26
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_172520.1 0 3.57 6.60 11.28 9.54
Smp_105730.1 0 0.00 0.00 11.80 9.62
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_205270.1 0 0.71 -0.40 10.02 9.83
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_166860.1 0 0.00 0.00 10.18 10.19
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_194980.1 0 2.89 8.17 12.59 10.55
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_081920.1 0 -1.83 3.45 12.11 11.06
Smp_058140.3 0 6.20 8.66 11.88 11.12
Smp_123200.1 0 0.00 0.00 12.38 11.42
Smp_123550.1 0 2.43 2.16 11.52 11.47
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_014780.1 0 9.27 11.17 13.92 13.01
Smp_154180.1 0 5.56 0.00 15.37 13.48
Smp_194970.1 0 6.28 10.15 15.43 13.82
Smp_194960.1 0 0.00 0.00 17.20 15.87

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_005470.1 SmLINC05552-IBu 0.96 1.35e-08 2.79e-06
Smp_014780.1 SmLINC05552-IBu 0.93 2.85e-07 2.22e-05
Smp_045200.1 SmLINC05552-IBu 0.92 8.96e-07 4.93e-05
Smp_058140.3 SmLINC05552-IBu 0.91 2.04e-06 8.84e-05
Smp_058660.1 SmLINC05552-IBu 0.90 3.36e-06 1.00e-04
Smp_081920.1 SmLINC05552-IBu 0.98 1.83e-11 4.00e-08
Smp_082580.1 SmLINC05552-IBu 0.96 3.16e-09 1.07e-06
Smp_105730.1 SmLINC05552-IBu 0.92 5.84e-07 3.66e-05
Smp_118560.1 SmLINC05552-IBu 0.93 4.00e-07 2.81e-05
Smp_123200.1 SmLINC05552-IBu 0.92 5.69e-07 3.59e-05
Smp_123550.1 SmLINC05552-IBu 0.95 1.69e-08 3.24e-06
Smp_125210.1 SmLINC05552-IBu 0.91 2.40e-06 9.90e-05
Smp_131840.1 SmLINC05552-IBu 0.95 5.21e-08 6.94e-06
Smp_134960.1 SmLINC05552-IBu 0.92 9.16e-07 5.01e-05
Smp_137320.1 SmLINC05552-IBu 0.92 1.15e-06 5.91e-05
Smp_141680.1 SmLINC05552-IBu 0.95 1.75e-08 3.33e-06
Smp_150980.2 SmLINC05552-IBu 0.90 2.67e-06 1.00e-04
Smp_151120.1 SmLINC05552-IBu 0.94 6.70e-08 8.24e-06
Smp_154180.1 SmLINC05552-IBu 0.94 7.52e-08 8.91e-06
Smp_154190.1 SmLINC05552-IBu 0.90 3.95e-06 1.00e-04
Smp_166860.1 SmLINC05552-IBu 0.94 1.27e-07 1.27e-05
Smp_170280.1 SmLINC05552-IBu 0.91 1.98e-06 8.65e-05
Smp_172480.1 SmLINC05552-IBu 0.92 1.02e-06 5.42e-05
Smp_172520.1 SmLINC05552-IBu 0.95 4.51e-08 6.30e-06
Smp_194960.1 SmLINC05552-IBu 0.94 9.03e-08 1.00e-05
Smp_194970.1 SmLINC05552-IBu 0.94 7.11e-08 8.57e-06
Smp_194980.1 SmLINC05552-IBu 0.93 3.38e-07 2.50e-05
Smp_197400.1 SmLINC05552-IBu 0.90 2.89e-06 1.00e-04
Smp_205270.1 SmLINC05552-IBu 0.94 1.34e-07 1.32e-05