Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC05545-IBu Data

Chromosome: Chr ZW - Coordinate: Chr ZW:51983588-51985110 - Strand: +


Fig. S5 for SmLINC05545-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC05545-IBu 0 3.35 4.91 7.54 6.40
Smp_163940.1 0 2.69 6.26 10.12 8.26
Smp_118560.1 0 6.31 8.12 10.54 9.19
Smp_175020.1 0 5.88 8.81 11.73 9.58
Smp_129110.1 0 7.10 10.62 11.56 10.18
Smp_040720.3 0 8.84 10.93 11.66 10.78

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_040720.3 SmLINC05545-IBu 0.93 5.08e-07 3.32e-05
Smp_118560.1 SmLINC05545-IBu 0.90 3.39e-06 1.00e-04
Smp_129110.1 SmLINC05545-IBu 0.90 2.63e-06 1.00e-04
Smp_163940.1 SmLINC05545-IBu 0.90 3.61e-06 1.00e-04
Smp_175020.1 SmLINC05545-IBu 0.91 2.38e-06 9.84e-05