Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC05482-IBu Data

Chromosome: Chr ZW - Coordinate: Chr ZW:48152545-48153516 - Strand: -


Fig. S5 for SmLINC05482-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_056360.3 0 -9.92 -10.13 2.08 1.89
SmLINC05482-IBu 0 -1.91 -1.91 7.70 7.12
Smp_160360.1 0 0.49 1.23 10.10 7.29
Smp_154190.1 0 -1.93 -1.93 10.13 8.88
Smp_125200.1 0 0.00 7.38 10.66 9.27
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_164550.1 0 5.78 6.30 11.08 9.99
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_034980.2 0 8.75 0.00 11.30 11.03
Smp_068270.1 0 0.21 0.34 12.30 11.22
Smp_150980.2 0 7.91 9.49 12.91 12.48

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_034980.2 SmLINC05482-IBu 0.98 1.46e-11 3.49e-08
Smp_056360.3 SmLINC05482-IBu 0.93 4.20e-07 2.91e-05
Smp_068270.1 SmLINC05482-IBu 0.95 5.96e-08 7.60e-06
Smp_125200.1 SmLINC05482-IBu 0.93 4.16e-07 2.89e-05
Smp_125210.1 SmLINC05482-IBu 0.91 2.07e-06 8.93e-05
Smp_150980.2 SmLINC05482-IBu 0.91 1.72e-06 7.82e-05
Smp_154190.1 SmLINC05482-IBu 0.92 6.98e-07 4.14e-05
Smp_160360.1 SmLINC05482-IBu 0.91 2.13e-06 9.10e-05
Smp_164550.1 SmLINC05482-IBu 0.94 6.36e-08 7.95e-06
Smp_170280.1 SmLINC05482-IBu 0.91 1.86e-06 8.27e-05
Smp_172480.1 SmLINC05482-IBu 0.90 3.63e-06 1.00e-04