Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC05450-IBu Data

Chromosome: Chr ZW - Coordinate: Chr ZW:47123215-47131915 - Strand: -


Fig. S5 for SmLINC05450-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC05450-IBu 0 2.05 1.65 0.00 9.25
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_070540.1 0 2.28 0.82 8.01 11.54
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_126340.1 0 0.00 2.97 7.05 12.21
Smp_164400.1 0 1.88 2.19 6.73 12.73
Smp_105450.1 0 4.55 9.19 10.26 14.94
Smp_152150.1 0 0.00 0.00 8.69 15.96

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_037720.1 SmLINC05450-IBu 0.90 3.67e-06 1.00e-04
Smp_041540.1 SmLINC05450-IBu 0.97 2.28e-09 8.68e-07
Smp_070540.1 SmLINC05450-IBu 0.97 4.72e-10 3.15e-07
Smp_105450.1 SmLINC05450-IBu 0.95 2.10e-08 3.76e-06
Smp_105450.2 SmLINC05450-IBu 0.92 5.85e-07 3.66e-05
Smp_126340.1 SmLINC05450-IBu 0.97 3.48e-10 2.59e-07
Smp_136730.1 SmLINC05450-IBu 0.92 5.42e-07 3.47e-05
Smp_152150.1 SmLINC05450-IBu 0.90 2.56e-06 1.00e-04
Smp_164400.1 SmLINC05450-IBu 0.93 4.43e-07 3.02e-05