Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC05430-IBu Data

Chromosome: Chr ZW - Coordinate: Chr ZW:44832666-44833733 - Strand: -


Fig. S5 for SmLINC05430-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC05430-IBu 0 0.23 -2.03 3.03 2.55
Smp_154190.1 0 -1.93 -1.93 10.13 8.88
Smp_205270.1 0 0.71 -0.40 10.02 9.83
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_203090.1 0 0.00 0.00 10.35 10.67
Smp_068270.1 0 0.21 0.34 12.30 11.22
Smp_031040.1 0 8.57 0.03 12.35 12.40
Smp_150980.2 0 7.91 9.49 12.91 12.48

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_031040.1 SmLINC05430-IBu 0.90 2.73e-06 1.00e-04
Smp_068270.1 SmLINC05430-IBu 0.90 2.75e-06 1.00e-04
Smp_150980.2 SmLINC05430-IBu 0.93 2.11e-07 1.80e-05
Smp_154190.1 SmLINC05430-IBu 0.91 1.49e-06 7.07e-05
Smp_172480.1 SmLINC05430-IBu 0.90 3.74e-06 1.00e-04
Smp_203090.1 SmLINC05430-IBu 0.90 3.58e-06 1.00e-04
Smp_205270.1 SmLINC05430-IBu 0.90 4.48e-06 1.00e-04