Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC05423-IBu Data

Chromosome: Chr ZW - Coordinate: Chr ZW:44692601-44693867 - Strand: -


Fig. S5 for SmLINC05423-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC05423-IBu 0 1.88 6.67 8.39 8.61
Smp_169670.1 0 0.00 8.19 10.09 10.85
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_063110.2 0 9.59 11.12 12.37 12.70

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_055340.2 SmLINC05423-IBu 0.91 2.24e-06 9.44e-05
Smp_063110.2 SmLINC05423-IBu 0.90 4.30e-06 1.00e-04
Smp_169670.1 SmLINC05423-IBu 0.91 2.16e-06 9.18e-05