Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC05422-IBu Data

Chromosome: Chr ZW - Coordinate: Chr ZW:44692601-44693691 - Strand: -


Fig. S5 for SmLINC05422-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC05422-IBu 0 0.00 2.54 8.92 9.40
Smp_205270.1 0 0.71 -0.40 10.02 9.83
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_031770.10 0 0.00 0.00 10.09 10.31
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_034980.2 0 8.75 0.00 11.30 11.03
Smp_095410.1 0 0.00 0.00 10.39 11.31
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_020760.2 0 9.23 8.40 12.26 12.26
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_172960.1 0 3.27 6.54 14.72 15.13

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_020760.2 SmLINC05422-IBu 0.91 2.51e-06 1.00e-04
Smp_031770.10 SmLINC05422-IBu 0.96 4.01e-09 1.25e-06
Smp_034980.2 SmLINC05422-IBu 0.91 1.27e-06 6.34e-05
Smp_040970.2 SmLINC05422-IBu 0.90 4.78e-06 1.00e-04
Smp_056460.1 SmLINC05422-IBu 0.93 4.43e-07 3.02e-05
Smp_058660.1 SmLINC05422-IBu 0.93 3.10e-07 2.36e-05
Smp_079420.1 SmLINC05422-IBu 0.90 3.13e-06 1.00e-04
Smp_095410.1 SmLINC05422-IBu 0.98 1.23e-10 1.32e-07
Smp_137000.2 SmLINC05422-IBu 0.90 3.99e-06 1.00e-04
Smp_145400.1 SmLINC05422-IBu 0.95 4.32e-08 6.12e-06
Smp_172480.1 SmLINC05422-IBu 0.90 3.10e-06 1.00e-04
Smp_172960.1 SmLINC05422-IBu 0.92 6.06e-07 3.76e-05
Smp_192780.1 SmLINC05422-IBu 0.93 2.46e-07 2.01e-05
Smp_194860.1 SmLINC05422-IBu 0.91 1.62e-06 7.49e-05
Smp_205270.1 SmLINC05422-IBu 0.90 4.75e-06 1.00e-04