Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC05395-IBu Data

Chromosome: Chr ZW - Coordinate: Chr ZW:43641484-43643798 - Strand: +


Fig. S5 for SmLINC05395-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_017650.1 0 9.51 10.68 -7.98 0.00
Smp_083380.2 0 9.13 10.31 0.00 0.00
Smp_021340.3 0 9.76 11.05 9.34 9.26
SmLINC05395-IBu 0 9.00 9.50 8.73 9.28
Smp_064590.3 0 9.71 10.57 10.06 10.55
Smp_099160.4 0 11.96 13.30 11.03 12.32
Smp_141630.4 0 12.63 13.76 12.50 12.34

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_017650.1 SmLINC05395-IBu 0.91 1.85e-06 8.26e-05
Smp_021340.3 SmLINC05395-IBu 0.93 2.99e-07 2.30e-05
Smp_064590.3 SmLINC05395-IBu 0.96 1.20e-08 2.58e-06
Smp_083380.2 SmLINC05395-IBu 0.90 4.27e-06 1.00e-04
Smp_099160.4 SmLINC05395-IBu 0.92 9.28e-07 5.06e-05
Smp_141630.4 SmLINC05395-IBu 0.95 2.24e-08 3.92e-06