Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC05348-IBu Data

Chromosome: Chr ZW - Coordinate: Chr ZW:41870085-41871010 - Strand: +


Fig. S5 for SmLINC05348-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_062610.2 0 -1.05 -0.32 -6.81 -10.38
SmLINC05348-IBu 0 -0.21 0.48 -2.93 -5.35
Smp_017650.1 0 9.51 10.68 -7.98 0.00
Smp_034840.1 0 12.23 13.88 0.00 0.00
Smp_063650.3 0 8.82 10.72 0.00 0.00

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_017650.1 SmLINC05348-IBu 0.90 2.60e-06 1.00e-04
Smp_032120.1 SmLINC05348-IBu 0.93 4.15e-07 2.89e-05
Smp_034840.1 SmLINC05348-IBu 0.91 2.09e-06 8.97e-05
Smp_059340.3 SmLINC05348-IBu 0.91 2.12e-06 9.06e-05
Smp_062610.2 SmLINC05348-IBu 0.93 3.80e-07 2.71e-05
Smp_063650.3 SmLINC05348-IBu 0.93 2.83e-07 2.21e-05