Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC05336-IBu Data

Chromosome: Chr ZW - Coordinate: Chr ZW:41170612-41172201 - Strand: +


Fig. S5 for SmLINC05336-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_056360.3 0 -9.92 -10.13 2.08 1.89
SmLINC05336-IBu 0 0.00 3.76 8.62 7.81
Smp_084270.1 0 3.51 4.06 10.11 8.38
Smp_164550.1 0 5.78 6.30 11.08 9.99
Smp_034980.2 0 8.75 0.00 11.30 11.03
Smp_068270.1 0 0.21 0.34 12.30 11.22

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_034980.2 SmLINC05336-IBu 0.91 1.77e-06 7.98e-05
Smp_056360.3 SmLINC05336-IBu 0.92 1.07e-06 5.62e-05
Smp_068270.1 SmLINC05336-IBu 0.92 6.52e-07 3.95e-05
Smp_084270.1 SmLINC05336-IBu 0.90 4.68e-06 1.00e-04
Smp_164550.1 SmLINC05336-IBu 0.90 3.90e-06 1.00e-04