Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC05327-IBu Data

Chromosome: Chr ZW - Coordinate: Chr ZW:41067715-41077097 - Strand: -


Fig. S5 for SmLINC05327-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC05327-IBu 0 -0.07 -0.20 4.04 3.29
Smp_131840.1 0 1.87 2.16 10.14 8.34
Smp_005470.1 0 4.39 7.68 10.83 9.26
Smp_172520.1 0 3.57 6.60 11.28 9.54
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_205270.1 0 0.71 -0.40 10.02 9.83
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_166860.1 0 0.00 0.00 10.18 10.19
Smp_203090.1 0 0.00 0.00 10.35 10.67
Smp_081920.1 0 -1.83 3.45 12.11 11.06
Smp_058140.3 0 6.20 8.66 11.88 11.12
Smp_123550.1 0 2.43 2.16 11.52 11.47
Smp_177580.1 0 3.28 2.12 11.83 11.79
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_014780.1 0 9.27 11.17 13.92 13.01
Smp_154180.1 0 5.56 0.00 15.37 13.48
Smp_194960.1 0 0.00 0.00 17.20 15.87

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_005470.1 SmLINC05327-IBu 0.94 1.30e-07 1.30e-05
Smp_014780.1 SmLINC05327-IBu 0.91 1.24e-06 6.22e-05
Smp_058140.3 SmLINC05327-IBu 0.96 7.21e-09 1.83e-06
Smp_081920.1 SmLINC05327-IBu 0.96 6.98e-09 1.80e-06
Smp_082580.1 SmLINC05327-IBu 0.91 1.77e-06 8.00e-05
Smp_123550.1 SmLINC05327-IBu 0.94 7.79e-08 9.13e-06
Smp_131840.1 SmLINC05327-IBu 0.92 6.44e-07 3.92e-05
Smp_141680.1 SmLINC05327-IBu 0.90 3.03e-06 1.00e-04
Smp_150980.2 SmLINC05327-IBu 0.91 2.45e-06 1.00e-04
Smp_151120.1 SmLINC05327-IBu 0.90 2.65e-06 1.00e-04
Smp_154180.1 SmLINC05327-IBu 0.92 5.38e-07 3.45e-05
Smp_166860.1 SmLINC05327-IBu 0.96 6.01e-09 1.63e-06
Smp_172520.1 SmLINC05327-IBu 0.93 2.52e-07 2.04e-05
Smp_177580.1 SmLINC05327-IBu 0.90 3.82e-06 1.00e-04
Smp_194960.1 SmLINC05327-IBu 0.90 3.88e-06 1.00e-04
Smp_203090.1 SmLINC05327-IBu 0.91 1.46e-06 6.98e-05
Smp_205270.1 SmLINC05327-IBu 0.90 3.70e-06 1.00e-04