Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC05315-IBu Data

Chromosome: Chr ZW - Coordinate: Chr ZW:39319990-39324824 - Strand: +


Fig. S5 for SmLINC05315-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC05315-IBu 0 -7.57 -3.20 2.23 -0.47
Smp_128510.1 0 3.20 1.49 10.55 5.33
Smp_017610.1 0 -3.10 2.10 11.36 6.75
Smp_160360.1 0 0.49 1.23 10.10 7.29
Smp_197400.1 0 0.00 0.00 10.12 7.45
Smp_084270.1 0 3.51 4.06 10.11 8.38
Smp_200750.1 0 1.72 7.25 10.11 8.83
Smp_134960.1 0 -1.83 4.14 10.34 9.04
Smp_125200.1 0 0.00 7.38 10.66 9.27
Smp_175020.1 0 5.88 8.81 11.73 9.58
Smp_164550.1 0 5.78 6.30 11.08 9.99
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_068270.1 0 0.21 0.34 12.30 11.22

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_017610.1 SmLINC05315-IBu 0.95 2.81e-08 4.57e-06
Smp_068270.1 SmLINC05315-IBu 0.92 9.89e-07 5.29e-05
Smp_084270.1 SmLINC05315-IBu 0.93 3.26e-07 2.44e-05
Smp_125200.1 SmLINC05315-IBu 0.92 9.00e-07 4.95e-05
Smp_125210.1 SmLINC05315-IBu 0.92 6.09e-07 3.77e-05
Smp_128510.1 SmLINC05315-IBu 0.94 6.28e-08 7.88e-06
Smp_134960.1 SmLINC05315-IBu 0.90 3.09e-06 1.00e-04
Smp_160360.1 SmLINC05315-IBu 0.95 5.85e-08 7.51e-06
Smp_164550.1 SmLINC05315-IBu 0.93 4.23e-07 2.92e-05
Smp_175020.1 SmLINC05315-IBu 0.92 1.12e-06 5.79e-05
Smp_197400.1 SmLINC05315-IBu 0.91 1.65e-06 7.59e-05
Smp_200750.1 SmLINC05315-IBu 0.92 7.09e-07 4.19e-05