Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC05307-IBu Data

Chromosome: Chr ZW - Coordinate: Chr ZW:39301174-39317569 - Strand: +


Fig. S5 for SmLINC05307-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_195070.1 0 -1.13 -9.73 -18.26 -16.31
Smp_035200.3 0 -0.02 -1.98 -15.09 -15.09
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_051230.4 0 -1.10 -5.26 -12.47 -12.47
Smp_168080.2 0 -1.01 -12.06 -12.06 -12.06
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_125070.1 0 0.25 -4.98 -10.91 -10.91
Smp_112090.1 0 0.15 -7.44 -10.10 -10.10
Smp_204360.1 0 0.81 -0.39 -6.29 -10.08
Smp_184710.1 0 0.54 -2.76 -11.35 -9.04
Smp_032970.1 0 -0.24 -2.98 -11.57 -7.79
SmLINC05307-IBu 0 -0.24 -3.06 -4.14 -6.23
Smp_182090.1 0 0.34 -10.52 -4.07 -5.68

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032970.1 SmLINC05307-IBu 0.98 1.97e-11 4.20e-08
Smp_035200.3 SmLINC05307-IBu 0.92 8.88e-07 4.91e-05
Smp_036270.4 SmLINC05307-IBu 0.98 1.92e-11 4.12e-08
Smp_051230.4 SmLINC05307-IBu 0.90 4.41e-06 1.00e-04
Smp_111640.1 SmLINC05307-IBu 0.95 2.47e-08 4.19e-06
Smp_112090.1 SmLINC05307-IBu 0.94 8.47e-08 9.66e-06
Smp_125070.1 SmLINC05307-IBu 0.95 5.14e-08 6.88e-06
Smp_168080.2 SmLINC05307-IBu 0.94 6.43e-08 8.01e-06
Smp_182090.1 SmLINC05307-IBu 0.95 2.01e-08 3.65e-06
Smp_184710.1 SmLINC05307-IBu 0.90 2.93e-06 1.00e-04
Smp_195070.1 SmLINC05307-IBu 0.92 6.48e-07 3.93e-05
Smp_204360.1 SmLINC05307-IBu 0.91 2.21e-06 9.33e-05