Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC05251-IBu Data

Chromosome: Chr ZW - Coordinate: Chr ZW:37878930-37885521 - Strand: -


Fig. S5 for SmLINC05251-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC05251-IBu 0 -4.11 -0.44 2.87 2.65
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_031770.10 0 0.00 0.00 10.09 10.31
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_068270.1 0 0.21 0.34 12.30 11.22
Smp_145400.1 0 4.59 7.69 11.32 11.39

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_031770.10 SmLINC05251-IBu 0.91 1.61e-06 7.46e-05
Smp_045200.1 SmLINC05251-IBu 0.90 4.51e-06 1.00e-04
Smp_058660.1 SmLINC05251-IBu 0.93 3.65e-07 2.64e-05
Smp_068270.1 SmLINC05251-IBu 0.92 5.42e-07 3.47e-05
Smp_137320.1 SmLINC05251-IBu 0.90 4.67e-06 1.00e-04
Smp_141680.1 SmLINC05251-IBu 0.91 1.58e-06 7.37e-05
Smp_145400.1 SmLINC05251-IBu 0.92 9.68e-07 5.21e-05
Smp_151120.1 SmLINC05251-IBu 0.91 2.24e-06 9.43e-05
Smp_170280.1 SmLINC05251-IBu 0.93 4.87e-07 3.22e-05