Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC05216-IBu Data

Chromosome: Chr ZW - Coordinate: Chr ZW:35811938-35816776 - Strand: +


Fig. S5 for SmLINC05216-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_056360.3 0 -9.92 -10.13 2.08 1.89
Smp_159070.2 0 -0.62 -11.03 1.85 1.97
SmLINC05216-IBu 0 -1.93 -1.93 4.63 4.06
Smp_017610.1 0 -3.10 2.10 11.36 6.75
Smp_160360.1 0 0.49 1.23 10.10 7.29
Smp_197400.1 0 0.00 0.00 10.12 7.45
Smp_131840.1 0 1.87 2.16 10.14 8.34
Smp_084270.1 0 3.51 4.06 10.11 8.38
Smp_200750.1 0 1.72 7.25 10.11 8.83
Smp_154190.1 0 -1.93 -1.93 10.13 8.88
Smp_134960.1 0 -1.83 4.14 10.34 9.04
Smp_118560.1 0 6.31 8.12 10.54 9.19
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_105730.1 0 0.00 0.00 11.80 9.62
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_205270.1 0 0.71 -0.40 10.02 9.83
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_164550.1 0 5.78 6.30 11.08 9.99
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_034980.2 0 8.75 0.00 11.30 11.03
Smp_068270.1 0 0.21 0.34 12.30 11.22
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_194970.1 0 6.28 10.15 15.43 13.82
Smp_194960.1 0 0.00 0.00 17.20 15.87

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_017610.1 SmLINC05216-IBu 0.90 3.49e-06 1.00e-04
Smp_034980.2 SmLINC05216-IBu 0.95 1.55e-08 3.06e-06
Smp_045200.1 SmLINC05216-IBu 0.93 4.77e-07 3.17e-05
Smp_056360.3 SmLINC05216-IBu 0.94 1.40e-07 1.36e-05
Smp_068270.1 SmLINC05216-IBu 0.91 1.35e-06 6.61e-05
Smp_082580.1 SmLINC05216-IBu 0.91 1.94e-06 8.53e-05
Smp_084270.1 SmLINC05216-IBu 0.92 6.82e-07 4.07e-05
Smp_105730.1 SmLINC05216-IBu 0.91 1.86e-06 8.28e-05
Smp_118560.1 SmLINC05216-IBu 0.90 4.63e-06 1.00e-04
Smp_125210.1 SmLINC05216-IBu 0.93 2.40e-07 1.97e-05
Smp_131840.1 SmLINC05216-IBu 0.90 4.74e-06 1.00e-04
Smp_134960.1 SmLINC05216-IBu 0.93 2.88e-07 2.24e-05
Smp_137320.1 SmLINC05216-IBu 0.91 1.70e-06 7.78e-05
Smp_150980.2 SmLINC05216-IBu 0.90 3.16e-06 1.00e-04
Smp_154190.1 SmLINC05216-IBu 0.95 4.68e-08 6.46e-06
Smp_159070.2 SmLINC05216-IBu 0.92 1.18e-06 6.01e-05
Smp_160360.1 SmLINC05216-IBu 0.91 1.53e-06 7.21e-05
Smp_164550.1 SmLINC05216-IBu 0.96 1.22e-08 2.61e-06
Smp_170280.1 SmLINC05216-IBu 0.92 8.40e-07 4.72e-05
Smp_172480.1 SmLINC05216-IBu 0.93 3.24e-07 2.43e-05
Smp_194960.1 SmLINC05216-IBu 0.92 8.57e-07 4.78e-05
Smp_194970.1 SmLINC05216-IBu 0.90 2.86e-06 1.00e-04
Smp_197400.1 SmLINC05216-IBu 0.90 2.70e-06 1.00e-04
Smp_200750.1 SmLINC05216-IBu 0.92 1.05e-06 5.53e-05
Smp_205270.1 SmLINC05216-IBu 0.93 4.96e-07 3.26e-05