Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC05173-IBu Data

Chromosome: Chr ZW - Coordinate: Chr ZW:35229828-35237334 - Strand: +


Fig. S5 for SmLINC05173-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC05173-IBu 0 0.26 2.94 5.53 4.68
Smp_128510.1 0 3.20 1.49 10.55 5.33
Smp_017610.1 0 -3.10 2.10 11.36 6.75
Smp_163940.1 0 2.69 6.26 10.12 8.26
Smp_084270.1 0 3.51 4.06 10.11 8.38
Smp_200750.1 0 1.72 7.25 10.11 8.83
Smp_134960.1 0 -1.83 4.14 10.34 9.04
Smp_118560.1 0 6.31 8.12 10.54 9.19
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_175020.1 0 5.88 8.81 11.73 9.58
Smp_105730.1 0 0.00 0.00 11.80 9.62
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_205270.1 0 0.71 -0.40 10.02 9.83
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_164550.1 0 5.78 6.30 11.08 9.99
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_194980.1 0 2.89 8.17 12.59 10.55
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_068270.1 0 0.21 0.34 12.30 11.22
Smp_123200.1 0 0.00 0.00 12.38 11.42
Smp_194970.1 0 6.28 10.15 15.43 13.82
Smp_194960.1 0 0.00 0.00 17.20 15.87

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_017610.1 SmLINC05173-IBu 0.90 3.50e-06 1.00e-04
Smp_045200.1 SmLINC05173-IBu 0.95 1.75e-08 3.32e-06
Smp_058660.1 SmLINC05173-IBu 0.93 3.14e-07 2.38e-05
Smp_068270.1 SmLINC05173-IBu 0.91 1.35e-06 6.61e-05
Smp_082580.1 SmLINC05173-IBu 0.93 4.50e-07 3.05e-05
Smp_084270.1 SmLINC05173-IBu 0.95 3.51e-08 5.32e-06
Smp_105730.1 SmLINC05173-IBu 0.91 1.83e-06 8.19e-05
Smp_118560.1 SmLINC05173-IBu 0.94 6.72e-08 8.25e-06
Smp_123200.1 SmLINC05173-IBu 0.96 1.44e-08 2.91e-06
Smp_125210.1 SmLINC05173-IBu 0.94 6.40e-08 7.98e-06
Smp_128510.1 SmLINC05173-IBu 0.91 1.44e-06 6.90e-05
Smp_134960.1 SmLINC05173-IBu 0.95 1.92e-08 3.53e-06
Smp_137320.1 SmLINC05173-IBu 0.95 2.10e-08 3.76e-06
Smp_141680.1 SmLINC05173-IBu 0.94 6.23e-08 7.83e-06
Smp_151120.1 SmLINC05173-IBu 0.90 3.53e-06 1.00e-04
Smp_163940.1 SmLINC05173-IBu 0.96 3.38e-09 1.12e-06
Smp_164550.1 SmLINC05173-IBu 0.90 4.63e-06 1.00e-04
Smp_170280.1 SmLINC05173-IBu 0.96 8.97e-09 2.12e-06
Smp_175020.1 SmLINC05173-IBu 0.95 2.90e-08 4.66e-06
Smp_194960.1 SmLINC05173-IBu 0.93 3.04e-07 2.32e-05
Smp_194970.1 SmLINC05173-IBu 0.93 2.40e-07 1.97e-05
Smp_194980.1 SmLINC05173-IBu 0.94 1.90e-07 1.68e-05
Smp_200750.1 SmLINC05173-IBu 0.97 5.27e-10 3.37e-07
Smp_205270.1 SmLINC05173-IBu 0.90 3.87e-06 1.00e-04