Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC05105-IBu Data

Chromosome: Chr ZW - Coordinate: Chr ZW:31524405-31528379 - Strand: -


Fig. S5 for SmLINC05105-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC05105-IBu 0 2.62 -0.35 4.72 6.27
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_196830.1 0 -0.76 0.59 8.97 10.89
Smp_083430.1 0 4.18 6.49 11.73 13.40

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_083430.1 SmLINC05105-IBu 0.90 3.20e-06 1.00e-04
Smp_137810.1 SmLINC05105-IBu 0.91 2.00e-06 8.71e-05
Smp_196830.1 SmLINC05105-IBu 0.90 4.18e-06 1.00e-04