Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC05021-IBu Data

Chromosome: Chr ZW - Coordinate: Chr ZW:27844942-27845908 - Strand: +


Fig. S5 for SmLINC05021-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_056360.3 0 -9.92 -10.13 2.08 1.89
Smp_159070.2 0 -0.62 -11.03 1.85 1.97
SmLINC05021-IBu 0 0.00 0.00 7.11 6.69
Smp_154190.1 0 -1.93 -1.93 10.13 8.88
Smp_205270.1 0 0.71 -0.40 10.02 9.83
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_203090.1 0 0.00 0.00 10.35 10.67
Smp_034980.2 0 8.75 0.00 11.30 11.03
Smp_058140.3 0 6.20 8.66 11.88 11.12
Smp_031040.1 0 8.57 0.03 12.35 12.40
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_040970.2 0 9.27 9.42 14.46 14.83

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_031040.1 SmLINC05021-IBu 0.94 1.60e-07 1.49e-05
Smp_034980.2 SmLINC05021-IBu 0.90 3.71e-06 1.00e-04
Smp_040970.2 SmLINC05021-IBu 0.90 3.64e-06 1.00e-04
Smp_056360.3 SmLINC05021-IBu 0.91 1.60e-06 7.43e-05
Smp_058140.3 SmLINC05021-IBu 0.94 1.31e-07 1.30e-05
Smp_150980.2 SmLINC05021-IBu 0.93 3.00e-07 2.31e-05
Smp_154190.1 SmLINC05021-IBu 0.92 9.27e-07 5.05e-05
Smp_159070.2 SmLINC05021-IBu 0.90 3.53e-06 1.00e-04
Smp_172480.1 SmLINC05021-IBu 0.93 3.05e-07 2.33e-05
Smp_203090.1 SmLINC05021-IBu 0.93 3.99e-07 2.81e-05
Smp_205270.1 SmLINC05021-IBu 0.92 1.15e-06 5.88e-05