Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC04999-IBu Data

Chromosome: Chr ZW - Coordinate: Chr ZW:26192625-26193750 - Strand: +


Fig. S5 for SmLINC04999-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04999-IBu 0 1.12 0.31 4.65 3.24
Smp_134960.1 0 -1.83 4.14 10.34 9.04
Smp_005470.1 0 4.39 7.68 10.83 9.26
Smp_172520.1 0 3.57 6.60 11.28 9.54
Smp_105730.1 0 0.00 0.00 11.80 9.62
Smp_194980.1 0 2.89 8.17 12.59 10.55
Smp_194970.1 0 6.28 10.15 15.43 13.82

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_005470.1 SmLINC04999-IBu 0.91 2.32e-06 9.68e-05
Smp_105730.1 SmLINC04999-IBu 0.91 1.48e-06 7.05e-05
Smp_134960.1 SmLINC04999-IBu 0.90 4.81e-06 1.00e-04
Smp_172520.1 SmLINC04999-IBu 0.91 2.21e-06 9.33e-05
Smp_194970.1 SmLINC04999-IBu 0.90 4.07e-06 1.00e-04
Smp_194980.1 SmLINC04999-IBu 0.90 4.69e-06 1.00e-04