Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC04947-IBu Data

Chromosome: Chr ZW - Coordinate: Chr ZW:24489239-24489776 - Strand: +


Fig. 6A for SmLINC04947-IBu with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_021920.1 0 0.33 1.47 -5.43 -11.17
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_076040.2 0 -0.64 1.55 -9.83 -9.83
Smp_152710.1 0 -0.74 0.72 -9.64 -9.64
Smp_132470.1 0 0.90 3.28 -5.62 -9.01
Smp_060190.4 0 -0.15 1.63 -8.76 -8.76
Smp_141800.1 0 -3.07 0.09 -3.82 -7.51
Smp_014660.1 0 1.27 2.34 -5.37 -7.50
Smp_078010.1 0 -2.61 3.58 -0.01 -6.74
Smp_201670.1 0 -0.73 1.64 -6.67 -6.67
Smp_126180.3 0 -0.43 3.15 -0.86 -6.29
Smp_166530.1 0 0.50 3.97 -5.99 -5.99
SmLINC04947-IBu 0 -5.01 1.51 -1.96 -5.01
Smp_055420.1 0 -4.89 5.31 -4.89 -4.89
Smp_033670.2 0 1.59 2.15 -4.87 -4.87
Smp_084940.1 0 -2.11 1.80 -3.80 -4.78
Smp_120740.1 0 -0.36 1.05 -4.86 -4.75
Smp_179300.2 0 -1.95 -0.51 -3.94 -4.73
Smp_115510.1 0 0.70 2.56 -0.33 -4.70
Smp_006830.2 0 -0.57 2.34 -5.80 -4.64
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48
Smp_127790.1 0 -0.50 1.35 -1.97 -4.33
Smp_019260.2 0 0.65 2.01 -0.64 -4.31
Smp_184720.1 0 -1.57 1.46 -4.31 -4.31
Smp_184370.1 0 -1.11 0.66 -3.32 -4.28
Smp_035640.1 0 0.66 2.47 -3.45 -3.92
Smp_010140.2 0 7.72 10.83 -3.68 -3.68
Smp_036470.1 0 -1.93 1.42 -1.69 -3.55
Smp_136720.1 0 1.63 4.13 -5.84 -3.55
Smp_153650.1 0 -0.02 1.72 -2.93 -3.55
Smp_158680.1 0 0.18 0.75 -3.19 -3.53
Smp_011270.3 0 -0.96 1.19 -5.18 -3.39
Smp_148110.1 0 1.60 3.38 -2.98 -3.24
Smp_160670.1 0 1.07 2.08 -4.35 -3.20
Smp_052290.1 0 1.68 2.86 -1.36 -2.94
Smp_016750.1 0 2.12 4.97 1.57 -2.57
Smp_131300.1 0 1.18 2.14 -4.87 -2.56
Smp_135010.1 0 0.82 3.18 -0.95 -2.30
Smp_156660.1 0 -0.02 3.03 0.95 -2.28
Smp_139940.1 0 3.07 4.50 -0.39 -2.02
Smp_049600.3 0 1.80 2.94 -9.17 -1.90
Smp_202420.1 0 -0.06 2.13 -4.70 -1.89
Smp_018800.1 0 3.14 4.22 -2.08 -1.80
Smp_029940.1 0 0.49 2.88 -3.66 -1.65
Smp_146710.1 0 2.31 2.58 -1.48 -1.30
Smp_189980.1 0 1.62 9.93 -1.10 -1.10
Smp_145950.1 0 1.16 2.62 -4.07 -0.95
Smp_174170.1 0 2.27 3.86 1.11 -0.90
Smp_048520.3 0 -2.64 4.09 0.83 -0.55
Smp_006830.1 0 -0.91 -12.50 -0.79 -0.49
Smp_134100.1 0 0.70 4.69 0.40 -0.45
Smp_075290.4 0 0.20 2.62 -2.13 -0.42
Smp_144350.1 0 2.33 4.53 0.32 -0.03
Smp_153210.1 0 3.24 5.11 0.30 -0.00
Smp_171390.1 0 1.88 5.93 0.00 0.00
Smp_205590.1 0 0.00 6.18 0.00 0.00
Smp_034840.1 0 12.23 13.88 0.00 0.00
Smp_139170.1 0 2.45 4.33 0.78 0.06
Smp_156370.1 0 -1.21 3.29 0.78 0.34
Smp_163550.1 0 1.70 4.66 1.90 0.50
Smp_175290.1 0 2.94 5.17 0.92 0.51
Smp_084600.2 0 1.97 4.18 -1.81 0.75
Smp_159070.4 0 3.29 5.54 2.90 0.83
Smp_179740.1 0 1.00 3.85 0.39 0.86
Smp_188230.1 0 2.60 5.01 2.53 1.16
Smp_187540.1 0 -1.83 4.69 2.36 1.42
Smp_123920.1 0 2.53 6.35 1.54 1.49
Smp_205310.1 0 -0.53 4.40 -2.57 1.66
Smp_212600.1 0 2.41 4.90 2.41 2.00
Smp_155250.1 0 4.57 5.88 4.24 2.03
Smp_198240.1 0 0.82 5.12 3.23 2.11
Smp_139370.1 0 1.42 5.03 3.94 2.46
Smp_138070.1 0 2.41 6.98 -1.44 3.23
Smp_070020.1 0 0.03 4.30 3.67 3.27
Smp_134570.1 0 1.52 5.26 4.16 3.39
Smp_038960.1 0 2.10 5.13 3.08 3.41
Smp_155430.1 0 1.80 5.37 3.71 3.43
Smp_198690.1 0 0.21 4.21 3.40 3.57
Smp_136120.1 0 5.65 6.93 4.13 3.70
Smp_138080.1 0 4.97 10.75 -3.79 3.75
Smp_126220.1 0 1.80 5.25 1.87 4.04
Smp_152540.1 0 3.53 6.32 3.87 4.18
Smp_093710.1 0 2.82 6.32 6.22 4.40
Smp_200520.1 0 2.06 7.02 3.71 4.93
Smp_010110.3 0 0.00 7.37 4.59 5.00
Smp_189380.1 0 1.72 6.15 2.10 5.31
Smp_093790.1 0 2.46 6.22 -0.90 5.51
Smp_175300.1 0 6.82 9.29 5.85 5.56
Smp_031180.1 0 4.01 8.75 7.65 5.72
Smp_047680.1 0 5.03 6.52 2.68 6.13
Smp_062070.1 0 9.47 10.97 6.18 8.79
Smp_084940.2 0 10.34 11.98 9.66 9.92
Smp_159150.1 0 12.28 13.98 12.38 11.81

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_006830.1 SmLINC04947-IBu -0.81 2.00e-04 2.40e-03
Smp_006830.2 SmLINC04947-IBu 0.97 3.90e-10 2.57e-07
Smp_010110.3 SmLINC04947-IBu 0.96 5.67e-09 1.46e-06
Smp_010140.2 SmLINC04947-IBu 0.86 3.41e-05 6.00e-04
Smp_011270.3 SmLINC04947-IBu 0.94 1.49e-07 1.35e-05
Smp_014660.1 SmLINC04947-IBu 0.88 8.84e-06 2.00e-04
Smp_016750.1 SmLINC04947-IBu 0.90 3.26e-06 1.00e-04
Smp_018800.1 SmLINC04947-IBu 0.86 3.78e-05 6.00e-04
Smp_019260.2 SmLINC04947-IBu 0.82 1.00e-04 1.80e-03
Smp_021920.1 SmLINC04947-IBu 0.84 6.85e-05 1.00e-03
Smp_029940.1 SmLINC04947-IBu 0.84 8.52e-05 1.20e-03
Smp_031180.1 SmLINC04947-IBu 0.91 1.41e-06 6.58e-05
Smp_032120.1 SmLINC04947-IBu 0.84 7.55e-05 1.10e-03
Smp_033670.2 SmLINC04947-IBu 0.81 2.00e-04 2.60e-03
Smp_034840.1 SmLINC04947-IBu 0.81 2.00e-04 2.50e-03
Smp_035640.1 SmLINC04947-IBu 0.84 8.31e-05 1.20e-03
Smp_036470.1 SmLINC04947-IBu 0.89 7.33e-06 2.00e-04
Smp_038960.1 SmLINC04947-IBu 0.94 1.47e-07 1.34e-05
Smp_047680.1 SmLINC04947-IBu 0.85 5.11e-05 8.00e-04
Smp_048520.3 SmLINC04947-IBu 0.83 1.00e-04 1.50e-03
Smp_049600.3 SmLINC04947-IBu 0.81 2.00e-04 2.60e-03
Smp_052290.1 SmLINC04947-IBu 0.83 1.00e-04 1.60e-03
Smp_055420.1 SmLINC04947-IBu 0.92 6.03e-07 3.59e-05
Smp_060190.4 SmLINC04947-IBu 0.94 6.11e-08 7.32e-06
Smp_062070.1 SmLINC04947-IBu 0.81 1.00e-04 2.20e-03
Smp_070020.1 SmLINC04947-IBu 0.80 2.00e-04 3.00e-03
Smp_075290.4 SmLINC04947-IBu 0.92 6.16e-07 3.64e-05
Smp_076040.2 SmLINC04947-IBu 0.90 3.08e-06 1.00e-04
Smp_078010.1 SmLINC04947-IBu 0.86 3.72e-05 6.00e-04
Smp_084600.2 SmLINC04947-IBu 0.96 1.31e-08 2.57e-06
Smp_084940.1 SmLINC04947-IBu 0.82 1.00e-04 1.70e-03
Smp_084940.2 SmLINC04947-IBu 0.81 2.00e-04 2.40e-03
Smp_093710.1 SmLINC04947-IBu 0.88 1.10e-05 2.00e-04
Smp_093790.1 SmLINC04947-IBu 0.84 7.22e-05 1.10e-03
Smp_115510.1 SmLINC04947-IBu 0.92 6.93e-07 3.95e-05
Smp_120740.1 SmLINC04947-IBu 0.87 1.59e-05 3.00e-04
Smp_123920.1 SmLINC04947-IBu 0.92 7.45e-07 4.16e-05
Smp_126180.3 SmLINC04947-IBu 0.94 8.19e-08 8.95e-06
Smp_126220.1 SmLINC04947-IBu 0.93 4.60e-07 2.97e-05
Smp_127790.1 SmLINC04947-IBu 0.92 1.04e-06 5.31e-05
Smp_131300.1 SmLINC04947-IBu 0.93 2.08e-07 1.70e-05
Smp_132470.1 SmLINC04947-IBu 0.94 1.52e-07 1.37e-05
Smp_134100.1 SmLINC04947-IBu 0.83 1.00e-04 1.50e-03
Smp_134570.1 SmLINC04947-IBu 0.89 8.48e-06 2.00e-04
Smp_135010.1 SmLINC04947-IBu 0.93 4.09e-07 2.73e-05
Smp_136120.1 SmLINC04947-IBu 0.80 3.00e-04 3.30e-03
Smp_136720.1 SmLINC04947-IBu 0.93 2.87e-07 2.13e-05
Smp_138070.1 SmLINC04947-IBu 0.89 7.29e-06 2.00e-04
Smp_138080.1 SmLINC04947-IBu 0.88 1.43e-05 3.00e-04
Smp_139170.1 SmLINC04947-IBu 0.89 6.83e-06 2.00e-04
Smp_139370.1 SmLINC04947-IBu 0.86 3.22e-05 6.00e-04
Smp_139940.1 SmLINC04947-IBu 0.88 1.50e-05 3.00e-04
Smp_141800.1 SmLINC04947-IBu 0.93 1.99e-07 1.65e-05
Smp_144350.1 SmLINC04947-IBu 0.92 6.35e-07 3.72e-05
Smp_145950.1 SmLINC04947-IBu 0.88 1.30e-05 3.00e-04
Smp_146710.1 SmLINC04947-IBu 0.81 2.00e-04 2.50e-03
Smp_148110.1 SmLINC04947-IBu 0.87 1.77e-05 4.00e-04
Smp_152540.1 SmLINC04947-IBu 0.94 1.27e-07 1.21e-05
Smp_152710.1 SmLINC04947-IBu 0.95 4.38e-08 5.83e-06
Smp_153210.1 SmLINC04947-IBu 0.84 7.25e-05 1.10e-03
Smp_153650.1 SmLINC04947-IBu 0.84 7.49e-05 1.10e-03
Smp_155250.1 SmLINC04947-IBu 0.86 3.17e-05 6.00e-04
Smp_155430.1 SmLINC04947-IBu 0.92 1.07e-06 5.41e-05
Smp_156370.1 SmLINC04947-IBu 0.98 8.51e-11 9.62e-08
Smp_156660.1 SmLINC04947-IBu 0.94 7.20e-08 8.18e-06
Smp_158680.1 SmLINC04947-IBu 0.80 2.00e-04 2.90e-03
Smp_159070.3 SmLINC04947-IBu 0.90 2.70e-06 1.00e-04
Smp_159070.4 SmLINC04947-IBu 0.84 7.09e-05 1.10e-03
Smp_159150.1 SmLINC04947-IBu 0.82 1.00e-04 1.80e-03
Smp_160670.1 SmLINC04947-IBu 0.81 2.00e-04 2.40e-03
Smp_163550.1 SmLINC04947-IBu 0.91 1.97e-06 8.31e-05
Smp_166530.1 SmLINC04947-IBu 0.93 2.47e-07 1.92e-05
Smp_171390.1 SmLINC04947-IBu 0.85 5.16e-05 8.00e-04
Smp_174170.1 SmLINC04947-IBu 0.84 7.60e-05 1.10e-03
Smp_175290.1 SmLINC04947-IBu 0.86 3.41e-05 6.00e-04
Smp_175300.1 SmLINC04947-IBu 0.89 6.36e-06 1.00e-04
Smp_179300.2 SmLINC04947-IBu 0.84 6.39e-05 1.00e-03
Smp_179740.1 SmLINC04947-IBu 0.95 3.15e-08 4.65e-06
Smp_184370.1 SmLINC04947-IBu 0.85 4.85e-05 8.00e-04
Smp_184720.1 SmLINC04947-IBu 0.98 1.31e-10 1.26e-07
Smp_187540.1 SmLINC04947-IBu 0.80 2.00e-04 2.80e-03
Smp_188230.1 SmLINC04947-IBu 0.95 6.07e-08 7.28e-06
Smp_189380.1 SmLINC04947-IBu 0.82 1.00e-04 1.90e-03
Smp_189980.1 SmLINC04947-IBu 0.82 1.00e-04 1.80e-03
Smp_198240.1 SmLINC04947-IBu 0.93 4.52e-07 2.93e-05
Smp_198690.1 SmLINC04947-IBu 0.80 3.00e-04 3.10e-03
Smp_200520.1 SmLINC04947-IBu 0.96 3.78e-09 1.12e-06
Smp_201670.1 SmLINC04947-IBu 0.92 6.28e-07 3.69e-05
Smp_202420.1 SmLINC04947-IBu 0.89 8.80e-06 2.00e-04
Smp_205310.1 SmLINC04947-IBu 0.89 5.73e-06 1.00e-04
Smp_205590.1 SmLINC04947-IBu 0.89 7.04e-06 2.00e-04
Smp_212600.1 SmLINC04947-IBu 0.90 2.70e-06 1.00e-04
Fig. S5 for SmLINC04947-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04947-IBu 0 -5.01 1.51 -1.96 -5.01
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_159070.3 SmLINC04947-IBu 0.9 2.70e-06 1.00e-04