Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC04882-IBu Data

Chromosome: Chr ZW - Coordinate: Chr ZW:18925820-18931270 - Strand: -


Fig. S5 for SmLINC04882-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_131840.1 0 1.87 2.16 10.14 8.34
SmLINC04882-IBu 0 0.00 0.00 10.03 8.84
Smp_005470.1 0 4.39 7.68 10.83 9.26
Smp_172520.1 0 3.57 6.60 11.28 9.54
Smp_105730.1 0 0.00 0.00 11.80 9.62
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_194980.1 0 2.89 8.17 12.59 10.55
Smp_081920.1 0 -1.83 3.45 12.11 11.06
Smp_058140.3 0 6.20 8.66 11.88 11.12
Smp_123200.1 0 0.00 0.00 12.38 11.42
Smp_154180.1 0 5.56 0.00 15.37 13.48
Smp_194970.1 0 6.28 10.15 15.43 13.82
Smp_194960.1 0 0.00 0.00 17.20 15.87

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_005470.1 SmLINC04882-IBu 0.94 8.65e-08 9.80e-06
Smp_058140.3 SmLINC04882-IBu 0.93 4.84e-07 3.21e-05
Smp_081920.1 SmLINC04882-IBu 0.95 3.09e-08 4.87e-06
Smp_082580.1 SmLINC04882-IBu 0.90 2.79e-06 1.00e-04
Smp_105730.1 SmLINC04882-IBu 0.91 2.09e-06 8.98e-05
Smp_123200.1 SmLINC04882-IBu 0.92 5.67e-07 3.58e-05
Smp_131840.1 SmLINC04882-IBu 0.91 2.23e-06 9.39e-05
Smp_154180.1 SmLINC04882-IBu 0.90 3.87e-06 1.00e-04
Smp_172520.1 SmLINC04882-IBu 0.94 1.87e-07 1.66e-05
Smp_194960.1 SmLINC04882-IBu 0.90 3.35e-06 1.00e-04
Smp_194970.1 SmLINC04882-IBu 0.91 1.72e-06 7.82e-05
Smp_194980.1 SmLINC04882-IBu 0.91 1.62e-06 7.52e-05